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[186091_s_at]

Description T07C4.10B /REP_DB=WormBase Gene ID /WP=CE23955 /TR=Q9U377 /GB=CAB54302.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 73      6grp_total > 39      4grp_total > 33      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 440.1
(-3)
P 		791.7
(3)
P 		640.3
(0.4)
P 		791.1
(3)
P 		352
B 449.2
(-3)
P 		642.3
(3)
P 		643.1
(3)
P 		641.2
(2.9)
P 		194
C 443.1
(-3)
P 		711.2
(3)
P 		578.8
(0)
P 		527.8
(-1.1)
P 		268
avr 444.1
(-3) 		715.1
(3) 		620.7
(0.9) 		653.4
(1.6) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 534.8
(-0.1)
P 		613.3
(2.1)
P 		432.7
(-3)
P 		469.3
(-2)
P 		601
(1.8)
P 		645.1
(3)
P 		212
B 668.8
(3)
P 		606.5
(1.9)
P 		324.1
(-3)
P 		408.4
(-1.5)
P 		601.6
(1.8)
P 		536.9
(0.7)
P 		345
C 673.9
(3)
P 		520.7
(-0.1)
P 		451.1
(-1.5)
P 		377
(-3)
P 		604.9
(1.6)
P 		551.7
(0.5)
P 		297
avr 625.8
(3) 		580.2
(1.8) 		402.6
(-3) 		418.2
(-2.6) 		602.5
(2.4) 		577.9
(1.7) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 160.3
(1.8)
P 		171.9
(3)
P 		167.4
(2.5)
P 		115.8
(-3)
P 		56
B 143.3
(-1.2)
P 		158.6
(3)
P 		149
(0.4)
P 		136.6
(-3)
P 		22
C 146.7
(-0)
P 		204.5
(3)
P 		201.7
(2.9)
P 		89
(-3)
P 		116
avr 150.1
(0.4) 		178.3
(3) 		172.7
(2.5) 		113.8
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 98.6
(-2.8)
P 		218.1
(3)
P 		94.2
(-3)
P 		119
(-1.8)
P 		181.3
(1.2)
P 		157.1
(0)
P 		124
B 232.7
(2.6)
P 		201.9
(1.5)
P 		78.7
(-3)
P 		108.2
(-1.9)
P 		244.4
(3)
P 		200.2
(1.4)
P 		166
C 249.8
(3)
P 		158.9
(-0.1)
P 		114.8
(-1.7)
P 		75.8
(-3)
P 		195.7
(1.1)
P 		184.7
(0.8)
P 		174
avr 193.7
(2.3) 		193
(2.2) 		95.9
(-3) 		101
(-2.7) 		207.1
(3) 		180.7
(1.6) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186091_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6560
Sequence Type Exemplar sequence
Representative Public ID T07C4.10B NCBI
Target Description T07C4.10B /REP_DB=WormBase Gene ID /WP=CE23955 /TR=Q9U377 /GB=CAB54302.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027582(11), NM_001027581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027582 NCBI Caenorhabditis elegans T07A5.6b (T07A5.6) mRNA, complete cds. 11/11 None
NM_001027581 NCBI Caenorhabditis elegans T07A5.6a (T07A5.6) mRNA, complete cds. 11/11 None
SNAP00000030114 ENSEMBL cdna:SNAP chromosome:CEL140:III:10318972:10319412:1 11/11 None
GENEFINDER00000030123 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10318972:10319412:1 11/11 None
T07A5.6b ENSEMBL cdna:known chromosome:CEL140:III:10318885:10319711:1 gene:T07A5.6 11/11 None
T07A5.6a ENSEMBL cdna:known chromosome:CEL140:III:10318972:10319572:1 gene:T07A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10318967-10319408(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07A5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88136 Hypothetical protein T07A5.6b [Caenorhabditis elegans] ref|NP_001022753.1| T07A5.6b [Caenorhabditis elegans] gb|AAX12521.1| short coiled-coil domain-containing protein UNC-69 splice variant T07A5.6b [Caenorhabditis elegans] 6.0E-46
blast CAE56799 Hypothetical protein CBG24611 [Caenorhabditis briggsae] 6.0E-44
blast CAB54302 Hypothetical protein T07A5.6a [Caenorhabditis elegans] ref|NP_001022752.1| T07A5.6a [Caenorhabditis elegans] 2.0E-36
blast CAA88136 Hypothetical protein T07A5.6b [Caenorhabditis elegans] ref|NP_001022753.1| T07A5.6b [Caenorhabditis elegans] gb|AAX12521.1| short coiled-coil domain-containing protein UNC-69 splice variant T07A5.6b [Caenorhabditis elegans] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:186091_S_AT
gagcaagatgatattcctctcgctgatgatgacgacactgtaactataattagcggtggg
aaaactccgagagctgcccagccacttccgaaggaggaaccaccagaggatccagaagag
aaagcccggatgatcacacaagtgctggaacttcagaatactttggatgatctctcacaa
cgcgtcgaatctgtcaaggaagagagtttgaagttgagatcggaaaatcaagtgctcggc
cagtacattcagaacctaatgtcctcctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAAGATGATATTCCTCTCGCTG 403 391 28 Antisense
GATATTCCTCTCGCTGATGATGACG 136 427 37 Antisense
GATGATGACGACACTGTAACTATAA 696 409 52 Antisense
GGTGGGAAAACTCCGAGAGCTGCCC 456 497 82 Antisense
CCGAAGGAGGAACCACCAGAGGATC 188 261 115 Antisense
GAGAAAGCCCGGATGATCACACAAG 398 393 145 Antisense
GATCACACAAGTGCTGGAACTTCAG 307 421 159 Antisense
TCTCACAACGCGTCGAATCTGTCAA 80 613 200 Antisense
GGAAAATCAAGTGCTCGGCCAGTAC 25 529 249 Antisense
TGCTCGGCCAGTACATTCAGAACCT 175 581 260 Antisense
CATTCAGAACCTAATGTCCTCCTCG 44 215 273 Antisense
Sequence Source Affymetrix Proprietary Database