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[186090_s_at]

Description Y71A12B.T /REP_DB=WormBase Gene ID /WP=CE24600 /TR=Q9NEM8 /GB=CAB82004.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 53      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 48.6
(3)
A 		42
(2.1)
P 		19.2
(-0.9)
A 		3.5
(-3)
A 		45
B 37.5
(1.6)
P 		31.1
(-2.9)
A 		39.5
(3)
A 		30.9
(-3)
A 		9
C 47
(3)
A 		31.8
(-0.5)
A 		40.9
(1.6)
A 		21.1
(-3)
A 		26
avr 44.4
(3) 		35
(0.8) 		33.2
(0.4) 		18.5
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 19.3
(-2.4)
A 		62.6
(3)
P 		43.8
(0.6)
P 		53.4
(1.8)
A 		14.8
(-3)
A 		37.9
(-0.1)
A 		48
B 48.1
(3)
P 		32.2
(-0.2)
P 		27.5
(-1.2)
A 		18.4
(-3)
A 		32.5
(-0.2)
A 		43
(2)
A 		30
C 42
(2.4)
P 		26.3
(0.2)
A 		25.4
(0.1)
A 		2.8
(-3)
A 		45.2
(2.8)
P 		46.6
(3)
M 		44
avr 36.5
(1) 		40.4
(2.3) 		32.2
(-0.5) 		24.9
(-3) 		30.8
(-1) 		42.5
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.7
(3)
A 		9.1
(0)
P 		5
(-1.4)
A 		0.5
(-3)
A 		17
B 12
(3)
P 		7.7
(-1.8)
A 		9.1
(-0.2)
A 		6.6
(-3)
A 		5
C 15.6
(3)
A 		9.1
(-0.3)
A 		14.2
(2.3)
A 		3.6
(-3)
A 		12
avr 15.1
(3) 		8.6
(-0.4) 		9.4
(0) 		3.6
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.6
(-3)
A 		22.2
(3)
P 		9.5
(-1.1)
P 		13.6
(0.2)
A 		4.5
(-2.7)
A 		9.2
(-1.2)
A 		19
B 16.7
(3)
P 		10.7
(-0.1)
P 		6.7
(-2.1)
A 		4.9
(-3)
A 		13.2
(1.2)
A 		16
(2.6)
A 		12
C 15.6
(3)
P 		8
(-0)
A 		6.5
(-0.6)
A 		0.6
(-3)
A 		14.6
(2.6)
P 		15.6
(3)
M 		15
avr 12
(1.7) 		13.6
(3) 		7.6
(-2) 		6.4
(-3) 		10.8
(0.7) 		13.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186090_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18779
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.T NCBI
Target Description Y71A12B.T /REP_DB=WormBase Gene ID /WP=CE24600 /TR=Q9NEM8 /GB=CAB82004.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061039 NCBI Caenorhabditis elegans Y71A12B.12 (Y71A12B.12) mRNA, complete cds. 11/11 A 
GENEFINDER00000038404 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14009915:14013115:1 11/11 None
SNAP00000038387 ENSEMBL cdna:SNAP chromosome:CEL140:I:14012727:14013115:1 11/11 None
Y71A12B.12.1 ENSEMBL cdna:known chromosome:CEL140:I:14012577:14016589:1 gene:Y71A12B.12 11/11 A 
Y71A12B.12.2 ENSEMBL cdna:known chromosome:CEL140:I:14012607:14016589:1 gene:Y71A12B.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14012657-14013300(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.12
Entrez Gene 173263 Entrez gene
SwissProt Q9NEM8 EMBL-EBI
WormBase CE36899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82004 Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] emb|CAH10808.1| Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] ref|NP_493440.2| Y71A12B.12 [Caenorhabditis elegans] 0.0
blast T27518 hypothetical protein ZC334.5 - Caenorhabditis elegans 0.0
blast CAB16314 Hypothetical protein F47G4.2 [Caenorhabditis elegans] ref|NP_493455.1| F47G4.2 [Caenorhabditis elegans] 0.0
blast CAE18021 Hypothetical protein Y71A12B.15 [Caenorhabditis elegans] ref|NP_001021804.1| Y71A12B.15 [Caenorhabditis elegans] 2.0E-73
Sequence
Target Sequence 
>C. ELEGANS:186090_S_AT
acaatacgttttcgacattgcctcgagcaacgaagtctatgctcagctcctgaagctcaa
cgccacgtggtcctacaacatcgatcagaagctcaatggtgtctgttttattctgacaaa
agtcaatttcgaaaatgtgaagatgttcccggagacgtttgatcaactcgctaatcaatg
tctcaagtcgtttgttatttgtgatgagttcaaggtgatcgggccagcgattgatggtaa
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATACGTTTTCGACATTGCCTCG 305 113 87 Antisense
GACATTGCCTCGAGCAACGAAGTCT 465 369 100 Antisense
CAACGAAGTCTATGCTCAGCTCCTG 609 187 114 Antisense
TATGCTCAGCTCCTGAAGCTCAACG 271 655 124 Antisense
CGTGGTCCTACAACATCGATCAGAA 457 245 152 Antisense
GAAGCTCAATGGTGTCTGTTTTATT 84 343 174 Antisense
GTGAAGATGTTCCCGGAGACGTTTG 155 425 223 Antisense
GAGACGTTTGATCAACTCGCTAATC 36 395 238 Antisense
CTCGCTAATCAATGTCTCAAGTCGT 486 233 253 Antisense
TGAGTTCAAGGTGATCGGGCCAGCG 91 569 291 Antisense
GATCGGGCCAGCGATTGATGGTAAT 255 417 303 Antisense
Sequence Source Affymetrix Proprietary Database