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[186089_at]

Description Y71A12B.T /REP_DB=WormBase Gene ID /WP=CE24600 /TR=Q9NEM8 /GB=CAB82004.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 3.3
(-3)
A 		3.1
(-3)
A 		39.8
(1.6)
A 		51.2
(3)
A 		48
B 15.9
(1)
A 		21.9
(3)
A 		5.3
(-2.5)
A 		3.9
(-3)
A 		18
C 2.6
(-3)
A 		28
(1)
A 		24.8
(0.5)
A 		41.1
(3)
A 		39
avr 7.3
(-3) 		17.7
(-0.5) 		23.3
(0.9) 		32.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.1
(-3)
A 		17.1
(-0.7)
A 		19
(-0.4)
A 		39.6
(3)
A 		5.1
(-2.7)
A 		9
(-2)
A 		37
B 2.5
(-3)
A 		21.6
(3)
A 		8.2
(-1.2)
A 		3.9
(-2.6)
A 		3.2
(-2.8)
A 		7.1
(-1.6)
A 		19
C 10
(3)
A 		5.5
(-0.4)
A 		3.3
(-2.1)
A 		4
(-1.6)
A 		2.8
(-2.5)
A 		2.1
(-3)
A 		8
avr 5.2
(-2.3) 		14.7
(2.5) 		10.2
(0.2) 		15.8
(3) 		3.7
(-3) 		6.1
(-1.8) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-2.7)
A 		0.7
(-3)
A 		10.4
(3)
A 		7.5
(1.2)
A 		10
B 5.1
(2.6)
A 		5.4
(3)
A 		1.2
(-2.5)
A 		0.8
(-3)
A 		5
C 0.9
(-3)
A 		8.1
(2.6)
A 		8.6
(3)
A 		6.9
(1.7)
A 		8
avr 2.4
(-3) 		4.7
(0.2) 		6.7
(3) 		5.1
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.1
(0.5)
A 		4.1
(-0.8)
A 		10.1
(3)
A 		1.5
(-2.4)
A 		2.2
(-2)
A 		10
B 0.9
(-3)
A 		7.2
(3)
A 		2
(-2)
A 		1
(-2.9)
A 		1.3
(-2.6)
A 		2.6
(-1.4)
A 		6
C 3.7
(3)
A 		1.7
(-1)
A 		0.8
(-2.8)
A 		0.8
(-2.8)
A 		0.9
(-2.6)
A 		0.7
(-3)
A 		3
avr 1.7
(-2.2) 		5
(3) 		2.3
(-1.3) 		4
(1.4) 		1.2
(-3) 		1.8
(-2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186089_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18779
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.T NCBI
Target Description Y71A12B.T /REP_DB=WormBase Gene ID /WP=CE24600 /TR=Q9NEM8 /GB=CAB82004.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061039
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71A12B.12.2 ENSEMBL cdna:known chromosome:CEL140:I:14012607:14016589:1 gene:Y71A12B.12 A 
NM_061039 NCBI Caenorhabditis elegans Y71A12B.12 (Y71A12B.12) mRNA, complete cds. A 
GENEFINDER00000038404 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14009915:14013115:1 None
SNAP00000038387 ENSEMBL cdna:SNAP chromosome:CEL140:I:14012727:14013115:1 None
Y71A12B.12.1 ENSEMBL cdna:known chromosome:CEL140:I:14012577:14016589:1 gene:Y71A12B.12 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14012657-14013300(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.12
Entrez Gene 173263 Entrez gene
SwissProt Q9NEM8 EMBL-EBI
WormBase CE36899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82004 Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] emb|CAH10808.1| Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] ref|NP_493440.2| Y71A12B.12 [Caenorhabditis elegans] 0.0
blast T27518 hypothetical protein ZC334.5 - Caenorhabditis elegans 0.0
blast CAB16314 Hypothetical protein F47G4.2 [Caenorhabditis elegans] ref|NP_493455.1| F47G4.2 [Caenorhabditis elegans] 0.0
blast CAE18021 Hypothetical protein Y71A12B.15 [Caenorhabditis elegans] ref|NP_001021804.1| Y71A12B.15 [Caenorhabditis elegans] 2.0E-73
Sequence
Target Sequence 
>C. ELEGANS:186089_AT
tggcggatactttagtccatcaagctgctgcagctgtcgcgaagcaaattgatgcaggcc
actacaactcaaaacaatacgttttcgacattgcctcgagcaacgaagtctatgctcagc
tcctgaagctcaacgccacgtggtcctacaacatcgatcagaagctcaatggtgtctgtt
ttattctgacaaaagtcaatttcgaaaatgtgaagatgttcccggagacgtttgatcaac
tcgctaatcaatgtctcaagtcgtttgttatttgtgatgagttcaaggtgatcgggccag
cgattgatggtaataggaaaagtaagtgtttacggactccggctcgtaggctcagatcct
taggcttaggttgcaaagctaaatttctttgggcttattttgtcaagcgagttcatgcaa
attctcttacaactaggggaattatgtttactatcagtcttttaggcttcagactcttac
tattaggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGGATACTTTAGTCCATCAAGC 709 543 14 Antisense
TTAGTCCATCAAGCTGCTGCAGCTG 102 681 25 Antisense
GCTGCAGCTGTCGCGAAGCAAATTG 247 297 40 Antisense
AATTGATGCAGGCCACTACAACTCA 582 173 60 Antisense
TAAGTGTTTACGGACTCCGGCTCGT 582 621 336 Antisense
GGCTCGTAGGCTCAGATCCTTAGGC 237 537 354 Antisense
AGATCCTTAGGCTTAGGTTGCAAAG 253 59 367 Antisense
ATTTCTTTGGGCTTATTTTGTCAAG 42 15 396 Antisense
GAGTTCATGCAAATTCTCTTACAAC 236 399 422 Antisense
TACTATCAGTCTTTTAGGCTTCAGA 75 645 462 Antisense
GCTTCAGACTCTTACTATTAGGCTC 398 305 479 Antisense
Sequence Source Affymetrix Proprietary Database