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[186088_s_at]

Description F41H10.3 /REP_DB=WormBase Gene ID /WP=CE10276 /TR=Q20299 /GB=AAK29803.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 83      6grp_total > 37      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 581.2
(3)
P 		369.7
(-1.5)
P 		298.7
(-3)
P 		395.6
(-0.9)
P 		283
B 554.9
(3)
P 		310.1
(-1.3)
P 		210
(-3)
P 		449.1
(1.2)
P 		345
C 517.9
(3)
P 		331.8
(-3)
P 		352.6
(-2.3)
P 		386.8
(-1.2)
P 		186
avr 551.3
(3) 		337.2
(-1.9) 		287.1
(-3) 		410.5
(-0.2) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 471.3
(1.4)
P 		512.2
(2.2)
P 		255.1
(-3)
P 		337.8
(-1.3)
P 		468.2
(1.3)
P 		551.3
(3)
P 		296
B 658.1
(3)
P 		540.1
(0.7)
P 		413.3
(-1.7)
P 		390.3
(-2.2)
P 		347.3
(-3)
P 		580.9
(1.5)
P 		311
C 503
(0)
P 		608.6
(3)
P 		406.8
(-2.7)
P 		395
(-3)
P 		432.4
(-1.9)
P 		530.2
(0.8)
P 		214
avr 544.1
(2.7) 		553.6
(3) 		358.4
(-3) 		374.4
(-2.5) 		416
(-1.2) 		554.1
(3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 211.6
(3)
P 		80.3
(-2.1)
P 		78.1
(-2.2)
P 		57.9
(-3)
P 		154
B 177
(3)
P 		76.6
(-1.7)
P 		48.7
(-3)
P 		95.7
(-0.8)
P 		128
C 171.4
(3)
P 		95.4
(-1.3)
P 		122.9
(0.3)
P 		65.2
(-3)
P 		106
avr 186.7
(3) 		84.1
(-2.4) 		83.2
(-2.5) 		72.9
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 86.9
(-1.5)
P 		182.2
(3)
P 		55.6
(-3)
P 		85.7
(-1.6)
P 		141.3
(1.1)
P 		134.2
(0.7)
P 		127
B 229
(3)
P 		179.8
(0.7)
P 		100.4
(-3)
P 		103.4
(-2.9)
P 		141.1
(-1.1)
P 		216.6
(2.4)
P 		129
C 186.5
(3)
P 		185.7
(3)
P 		103.5
(-1.6)
P 		79.4
(-3)
P 		139.9
(0.4)
P 		177.5
(2.5)
P 		107
avr 167.5
(2.1) 		182.6
(3) 		86.5
(-3) 		89.5
(-2.8) 		140.8
(0.4) 		176.1
(2.6) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186088_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11071
Sequence Type Exemplar sequence
Representative Public ID F41H10.3 NCBI
Target Description F41H10.3 /REP_DB=WormBase Gene ID /WP=CE10276 /TR=Q20299 /GB=AAK29803.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171339(11), NM_171340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171339 NCBI Caenorhabditis elegans F41H10.3a (F41H10.3) mRNA, complete cds. 11/11 None
NM_171340 NCBI Caenorhabditis elegans F41H10.3b (F41H10.3) mRNA, complete cds. 11/11 None
SNAP00000003907 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5369795:5374398:1 11/11 None
GENEFINDER00000003915 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5369795:5374398:1 11/11 None
F41H10.3b ENSEMBL cdna:known chromosome:CEL140:IV:5369795:5374885:1 gene:F41H10.3 11/11 None
F41H10.3a ENSEMBL cdna:known chromosome:CEL140:IV:5369795:5374885:1 gene:F41H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5369800-5374404(+) 99.24 100.0
Public Domain and Genome References
Ensembl F41H10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29803 Hypothetical protein F41H10.3a [Caenorhabditis elegans] ref|NP_741398.1| F41H10.3a [Caenorhabditis elegans] 0.0
blast AAM98018 Hypothetical protein F41H10.3b [Caenorhabditis elegans] ref|NP_741399.1| F41H10.3b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186088_S_AT
tcctcttccgaaatcttctggtgttttggctcattcaaattcaacaataccatatgttca
gcgagtccccaacaactcaacacaatcagactttcggccgagaagcttcagtcaaaatag
tgttgcttccccggctcctgctcctgttccaaatgcaataaagagaagagaagtagggaa
tttaaaatctcggcagtatgtgccatggatcgcaaatagcagggcgttggtggcagcggc
gatggcaacgatggaggagacggctgaaaagatgtcttcgagcccgttactatcgtcaca
ggctccgatgacaactttgatgccaactcctcctcctccggctccggctcctgctcaagc
atctgcacaatcaacatcagcaactccagcattggtggatacaatatcggctggttcaac
gactacagaaacaactacaggcgattcaaatcagtcaaatcctcctttacggacgtacac
atcacacattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCTTCCGAAATCTTCTGGTGTT 640 591 2814 Antisense
AATACCATATGTTCAGCGAGTCCCC 191 173 2859 Antisense
CAACACAATCAGACTTTCGGCCGAG 671 189 2891 Antisense
GTCAAAATAGTGTTGCTTCCCCGGC 600 463 2924 Antisense
TGGCAGCGGCGATGGCAACGATGGA 216 545 3044 Antisense
AAAAGATGTCTTCGAGCCCGTTACT 687 131 3080 Antisense
AGCCCGTTACTATCGTCACAGGCTC 150 83 3094 Antisense
CACAGGCTCCGATGACAACTTTGAT 627 195 3110 Antisense
TCCTGCTCAAGCATCTGCACAATCA 658 593 3162 Antisense
AACATCAGCAACTCCAGCATTGGTG 50 139 3186 Antisense
TTACGGACGTACACATCACACATTC 197 655 3280 Antisense
Sequence Source Affymetrix Proprietary Database