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[186087_at]

Description Y71A12B.U /REP_DB=WormBase Gene ID /WP=CE24601 /TR=Q9NEM7 /GB=CAB82005.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 47      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 25
(3)
A 		8.2
(-2.6)
A 		7.1
(-3)
A 		7.9
(-2.7)
A 		18
B 45
(3)
A 		10.9
(-2.3)
A 		6.9
(-2.9)
A 		6.3
(-3)
A 		39
C 38.7
(3)
A 		6.5
(-3)
A 		7.9
(-2.7)
A 		13.8
(-1.6)
A 		32
avr 36.2
(3) 		8.5
(-2.8) 		7.3
(-3) 		9.3
(-2.6) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 17.5
(-0.9)
A 		43.5
(3)
A 		15.9
(-1.2)
A 		14.4
(-1.4)
A 		9.6
(-2.1)
A 		3.8
(-3)
A 		40
B 64.7
(3)
A 		18.2
(-1.7)
A 		10.2
(-2.5)
A 		7.7
(-2.7)
A 		7.7
(-2.7)
A 		5
(-3)
A 		60
C 56.4
(3)
A 		15.2
(-1.9)
A 		5.5
(-3)
A 		13.4
(-2.1)
A 		8.2
(-2.7)
A 		8.3
(-2.7)
A 		51
avr 46.2
(3) 		25.6
(-0.1) 		10.5
(-2.3) 		11.8
(-2.1) 		8.5
(-2.6) 		5.7
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.1
(3)
A 		1.8
(-2.5)
A 		1.9
(-2.5)
A 		1.2
(-3)
A 		8
B 14.3
(3)
A 		2.7
(-2.4)
A 		1.6
(-2.9)
A 		1.3
(-3)
A 		13
C 12.8
(3)
A 		1.9
(-3)
A 		2.8
(-2.5)
A 		2.3
(-2.8)
A 		11
avr 12.1
(3) 		2.1
(-2.7) 		2.1
(-2.7) 		1.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.2
(-2.1)
A 		15.5
(3)
A 		3.5
(-1.9)
A 		3.6
(-1.9)
A 		2.9
(-2.2)
A 		0.9
(-3)
A 		15
B 22.5
(3)
A 		6.1
(-1.8)
A 		2.5
(-2.8)
A 		2
(-3)
A 		3.1
(-2.7)
A 		1.9
(-3)
A 		21
C 20.9
(3)
A 		4.6
(-2)
A 		1.4
(-3)
A 		2.7
(-2.6)
A 		2.7
(-2.6)
A 		2.8
(-2.6)
A 		20
avr 15.5
(3) 		8.7
(-0) 		2.5
(-2.7) 		2.8
(-2.6) 		2.9
(-2.6) 		1.9
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18784
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.U NCBI
Target Description Y71A12B.U /REP_DB=WormBase Gene ID /WP=CE24601 /TR=Q9NEM7 /GB=CAB82005.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038404 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14009915:14013115:1 9/11 None
SNAP00000038386 ENSEMBL cdna:SNAP chromosome:CEL140:I:14010239:14010974:1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14010497-14012373(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE18021 Hypothetical protein Y71A12B.15 [Caenorhabditis elegans] ref|NP_001021804.1| Y71A12B.15 [Caenorhabditis elegans] 2.0E-73
blast CAB82004 Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] emb|CAH10808.1| Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] ref|NP_493440.2| Y71A12B.12 [Caenorhabditis elegans] 1.0E-52
blast CAE18021 Hypothetical protein Y71A12B.15 [Caenorhabditis elegans] ref|NP_001021804.1| Y71A12B.15 [Caenorhabditis elegans] 2.0E-41
blast CAB16314 Hypothetical protein F47G4.2 [Caenorhabditis elegans] ref|NP_493455.1| F47G4.2 [Caenorhabditis elegans] 5.0E-41
blast CAB82004 Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] emb|CAH10808.1| Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] ref|NP_493440.2| Y71A12B.12 [Caenorhabditis elegans] 3.0E-30
blast T27518 hypothetical protein ZC334.5 - Caenorhabditis elegans 3.0E-27
Sequence
Target Sequence 
>C. ELEGANS:186087_AT
acaaatgggattccaaccgtgcctacctcgccgtcaccatcctggctctcctcttacaat
cctgtgaacaagggccagcggaatgcgatttctgggctcctgccaatgaagcaatcgtca
aaaagttcccatacctcctcgccgctgatatcaccgaagacaccgaagcctacttcacaa
atggcatcgtttcccgggttcttcagagaacccacggcgacgggatcattctctgggctc
tgctggccacgaagatttttgctcagaaagatgccaaaaacgccgtgaaaatcaaaaatt
cagagtgtttctattttcttcatagtcctgtatctaaatctagcaccgttaagaatgcgt
cggaaaatatcatgttcttgatgaattggtcattgtgccgcaacccccgaggagaggact
ttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAATGGGATTCCAACCGTGCCTA 20 111 23 Antisense
CTCTCCTCTTACAATCCTGTGAACA 463 231 68 Antisense
AGCGGAATGCGATTTCTGGGCTCCT 435 81 99 Antisense
GGGCTCCTGCCAATGAAGCAATCGT 201 493 116 Antisense
CTCGCCGCTGATATCACCGAAGACA 703 233 160 Antisense
GAAGACACCGAAGCCTACTTCACAA 450 339 178 Antisense
TTCACAAATGGCATCGTTTCCCGGG 124 685 196 Antisense
AGAACCCACGGCGACGGGATCATTC 35 75 229 Antisense
TGCTGGCCACGAAGATTTTTGCTCA 450 583 263 Antisense
TGAATTGGTCATTGTGCCGCAACCC 199 575 404 Antisense
GCAACCCCCGAGGAGAGGACTTTGA 455 319 422 Antisense
Sequence Source Affymetrix Proprietary Database