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[186086_s_at]

Description C16E9.2B /REP_DB=WormBase Gene ID /WP=CE04016 /TR=Q18046 /GB=AAC47956.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      4grp_high_8_8 > 34      6grp_total > 49      4grp_total > 46      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 227.2
(3)
P 		183.4
(0.2)
P 		135.2
(-2.8)
P 		131.9
(-3)
P 		95
B 243.7
(3)
P 		202.7
(1)
P 		120.9
(-3)
M 		136.2
(-2.3)
P 		123
C 228.8
(3)
P 		176.4
(-2.6)
P 		172.3
(-3)
P 		209.1
(0.9)
P 		57
avr 233.2
(3) 		187.5
(-0) 		142.8
(-3) 		159.1
(-1.9) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 145.7
(-3)
P 		176.4
(-0.5)
P 		219.6
(3)
P 		161.8
(-1.7)
P 		193.6
(0.9)
P 		191.3
(0.7)
P 		74
B 270.6
(3)
P 		189.4
(-3)
P 		209.7
(-1.5)
P 		196.8
(-2.5)
P 		212.4
(-1.3)
P 		204.6
(-1.9)
P 		81
C 199.3
(1)
P 		171.5
(-1)
P 		142.3
(-3)
P 		172
(-0.9)
A 		183.7
(-0.1)
P 		228.1
(3)
P 		86
avr 205.2
(2.5) 		179.1
(-2.6) 		190.5
(-0.4) 		176.9
(-3) 		196.6
(0.8) 		208
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 82.7
(3)
P 		39.8
(-1.1)
P 		35.3
(-1.5)
P 		19.3
(-3)
P 		63
B 77.7
(3)
P 		50.1
(-0.3)
P 		28
(-3)
M 		29
(-2.9)
P 		50
C 75.7
(3)
P 		50.7
(-0.7)
P 		60.1
(0.7)
P 		35.3
(-3)
P 		40
avr 78.7
(3) 		46.9
(-0.8) 		41.1
(-1.4) 		27.9
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 26.9
(-3)
P 		62.7
(3)
P 		47.8
(0.5)
P 		41
(-0.6)
P 		58.4
(2.3)
P 		46.6
(0.3)
P 		36
B 94.1
(3)
P 		63
(-1.3)
P 		50.9
(-3)
P 		52.1
(-2.8)
P 		86.3
(1.9)
P 		76.3
(0.5)
P 		43
C 73.9
(2.6)
P 		52.3
(-0.5)
P 		36.2
(-2.8)
P 		34.6
(-3)
A 		59.4
(0.6)
P 		76.4
(3)
P 		42
avr 65
(2.3) 		59.3
(0.9) 		45
(-2.4) 		42.6
(-3) 		68
(3) 		66.4
(2.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186086_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16295
Sequence Type Exemplar sequence
Representative Public ID C16E9.2B NCBI
Target Description C16E9.2B /REP_DB=WormBase Gene ID /WP=CE04016 /TR=Q18046 /GB=AAC47956.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076773(11), NM_076774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076773 NCBI Caenorhabditis elegans C16E9.2a (C16E9.2) mRNA, complete cds. 11/11 A 
NM_076774 NCBI Caenorhabditis elegans C16E9.2b (C16E9.2) mRNA, complete cds. 11/11 None
SNAP00000015450 ENSEMBL cdna:SNAP chromosome:CEL140:X:6935715:6938689:1 11/11 None
GENEFINDER00000015456 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6935718:6938689:1 11/11 None
C16E9.2a ENSEMBL cdna:known chromosome:CEL140:X:6935695:6938986:1 gene:C16E9.2 11/11 A 
C16E9.2b ENSEMBL cdna:known chromosome:CEL140:X:6938361:6938768:1 gene:C16E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6938450-6938689(+) 100.0 100.0
Public Domain and Genome References
Ensembl C16E9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47961 Hypothetical protein C16E9.2a [Caenorhabditis elegans] ref|NP_509174.1| C16E9.2a [Caenorhabditis elegans] 0.0
blast CAE65822 Hypothetical protein CBG10937 [Caenorhabditis briggsae] 0.0
blast XP_786746 PREDICTED: similar to CG9646-PA [Strongylocentrotus purpuratus] 3.0E-59
blast XP_786746 PREDICTED: similar to CG9646-PA [Strongylocentrotus purpuratus] 3.0E-58
Sequence
Target Sequence 
>C. ELEGANS:186086_S_AT
gcgaggttttgcgcaagtttggcatggacttcgagagaagaaacgcgcagagtgcacacc
actgaatgcatttttgacctacgtcacactgccctggaacagtatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGGTTTTGCGCAAGTTTGGCAT 319 287 15 Antisense
TGCGCAAGTTTGGCATGGACTTCGA 327 545 24 Antisense
GTTTGGCATGGACTTCGAGAGAAGA 316 451 31 Antisense
GAGAGAAGAAACGCGCAGAGTGCAC 355 395 47 Antisense
AAGAAACGCGCAGAGTGCACACCAC 286 153 52 Antisense
GCGCAGAGTGCACACCACTGAATGC 637 287 59 Antisense
CACACCACTGAATGCATTTTTGACC 634 195 69 Antisense
ACTGAATGCATTTTTGACCTACGTC 407 91 75 Antisense
GCATTTTTGACCTACGTCACACTGC 138 309 82 Antisense
TACGTCACACTGCCCTGGAACAGTA 496 645 94 Antisense
CACACTGCCCTGGAACAGTATTTTA 416 195 99 Antisense
Sequence Source Affymetrix Proprietary Database