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[186085_at] 7TM chemoreceptor, srv family

Description T13A10.8 /REP_DB=WormBase Gene ID /WP=CE07489 /TR=Q22446 /GB=AAB38123.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 01      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 13.4
(-2.2)
A 		12.5
(-3)
A 		19.2
(3)
A 		15.3
(-0.5)
A 		7
B 31.5
(3)
A 		24.9
(-0)
A 		18.5
(-3)
A 		29.4
(2)
A 		13
C 1.8
(-3)
A 		1.5
(-3)
A 		11.3
(-1.8)
A 		52.5
(3)
P 		51
avr 15.6
(-2.2) 		13
(-3) 		16.3
(-2) 		32.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 13.5
(3)
A 		1.5
(-2.7)
A 		10.6
(1.6)
A 		0.8
(-3)
A 		11.3
(2)
A 		1.6
(-2.6)
A 		13
B 6.4
(-2.5)
A 		26
(3)
A 		14.2
(-0.3)
A 		15.7
(0.1)
A 		12.2
(-0.9)
A 		4.5
(-3)
A 		22
C 19.3
(2.4)
P 		20.9
(3)
P 		16.3
(1.2)
A 		17.7
(1.7)
A 		5.7
(-3)
A 		16.3
(1.2)
A 		15
avr 13.1
(0.9) 		16.1
(3) 		13.7
(1.3) 		11.4
(-0.3) 		9.7
(-1.5) 		7.5
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.9
(2.8)
A 		2.7
(-1.9)
A 		5
(3)
A 		2.2
(-3)
A 		3
B 10
(3)
A 		6.2
(-1)
A 		4.3
(-3)
A 		6.3
(-0.9)
A 		6
C 0.6
(-2.9)
A 		0.4
(-3)
A 		3.9
(-0.5)
A 		8.9
(3)
P 		9
avr 5.2
(1.7) 		3.1
(-3) 		4.4
(-0.1) 		5.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.5
(1.3)
A 		0.5
(-2.4)
A 		2.3
(0.9)
A 		0.2
(-3)
A 		3.4
(3)
A 		0.4
(-2.6)
A 		3
B 2.2
(-2.6)
A 		8.7
(3)
A 		3.5
(-1.5)
A 		4.2
(-0.9)
A 		5
(-0.2)
A 		1.7
(-3)
A 		7
C 7.1
(3)
P 		6.4
(2.2)
P 		4.1
(-0.4)
A 		3.6
(-1)
A 		1.8
(-3)
A 		5.5
(1.2)
A 		5
avr 3.9
(0.1) 		5.2
(3) 		3.3
(-1.2) 		2.7
(-2.6) 		3.4
(-1) 		2.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10636
Sequence Type Exemplar sequence
Representative Public ID T13A10.8 NCBI
Target Description T13A10.8 /REP_DB=WormBase Gene ID /WP=CE07489 /TR=Q22446 /GB=AAB38123.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068550 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-31) (srv-31) mRNA, complete cds. 11/11 None
GENEFINDER00000039099 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6269738:6272007:-1 11/11 None
T13A10.9 ENSEMBL cdna:known chromosome:CEL140:IV:6269757:6272007:-1 gene:T13A10.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039093 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6269743-6270406(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-31
Ensembl T13A10.9
Entrez Gene 188463 Entrez gene
SwissProt Q22446 EMBL-EBI
WormBase CE38107 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500951 Serpentine Receptor, class V family member (srv-31) [Caenorhabditis elegans] gb|AAB38123.3| Serpentine receptor, class v protein 31 [Caenorhabditis elegans] 0.0
blast NP_500951 Serpentine Receptor, class V family member (srv-31) [Caenorhabditis elegans] gb|AAB38123.3| Serpentine receptor, class v protein 31 [Caenorhabditis elegans] 1.0E-179
blast NP_500949 Serpentine Receptor, class V family member (srv-30) [Caenorhabditis elegans] gb|AAB38122.3| Serpentine receptor, class v protein 30 [Caenorhabditis elegans] 1.0E-150
blast NP_500949 Serpentine Receptor, class V family member (srv-30) [Caenorhabditis elegans] gb|AAB38122.3| Serpentine receptor, class v protein 30 [Caenorhabditis elegans] 1.0E-143
blast T16853 hypothetical protein T13A10.9 - Caenorhabditis elegans 1.0E-120
blast T16853 hypothetical protein T13A10.9 - Caenorhabditis elegans 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500951.2 7 9-31,44-66,86-108,129-151,180-202,218-240,255-277
T13A10.9 7 9-31,44-66,86-108,129-151,180-202,218-240,255-277
GENEFINDER00000039099 8 9-31,44-66,86-108,129-151,186-208,229-251,266-288,349-371
Sequence
Target Sequence 
>C. ELEGANS:186085_AT
gtttgcatattatctagctgtcaactacttttcaaggacacaaaataccggaccaatttt
ctacatgcgcgcagtttatccaattgccaatggaattctatcgtatattaatccattttg
tattataattttgaatcgggacttttcaaaacaattcagaacaatgttaaaatgtcaaaa
ctctaaaacgaaaggcagaagaacagctacagtttattctggaatgtcaaatcctgcgtt
aagaacaagatctaataaacatttaacaatttgtttactgttttggaagtggaaggaaaa
ctcgaatactgtattttttgttagtcacaattgctttattttgacaactcttggttgtct
tggattttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGCATATTATCTAGCTGTCAAC 499 451 63 Antisense
GCTGTCAACTACTTTTCAAGGACAC 91 293 79 Antisense
TTCAAGGACACAAAATACCGGACCA 195 653 93 Antisense
CAATTTTCTACATGCGCGCAGTTTA 309 181 116 Antisense
ATGCGCGCAGTTTATCCAATTGCCA 5 43 127 Antisense
GGAATTCTATCGTATATTAATCCAT 592 533 154 Antisense
ATCGGGACTTTTCAAAACAATTCAG 432 35 197 Antisense
GAACAGCTACAGTTTATTCTGGAAT 389 351 263 Antisense
GAATGTCAAATCCTGCGTTAAGAAC 709 331 284 Antisense
ATTGCTTTATTTTGACAACTCTTGG 398 5 392 Antisense
AACTCTTGGTTGTCTTGGATTTTAT 527 139 408 Antisense
Sequence Source Affymetrix Proprietary Database