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[186084_s_at]

Description T07C12.11 /REP_DB=WormBase Gene ID /WP=CE06393 /TR=Q22277 /GB=CAA98280.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 42      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 339.4
(-1.7)
P 		452.1
(3)
P 		416.1
(1.5)
P 		309.6
(-3)
P 		143
B 382
(0.9)
P 		450.7
(3)
P 		432.2
(2.4)
P 		252.9
(-3)
P 		198
C 396.9
(1.7)
P 		439.7
(3)
P 		362.5
(0.6)
P 		245.7
(-3)
P 		194
avr 372.8
(0.5) 		447.5
(3) 		403.6
(1.5) 		269.4
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 251.1
(-2.2)
P 		363
(0.8)
P 		446.9
(3)
P 		387.1
(1.4)
P 		272.9
(-1.6)
P 		220.4
(-3)
P 		227
B 338.2
(-0.2)
P 		451.1
(3)
P 		320.6
(-0.7)
P 		385.6
(1.1)
P 		284.9
(-1.7)
P 		239.7
(-3)
P 		211
C 265.1
(-2.1)
P 		449.8
(2.7)
P 		355.4
(0.3)
P 		460.7
(3)
P 		284.5
(-1.6)
P 		229.9
(-3)
P 		231
avr 284.8
(-1.3) 		421.3
(3) 		374.3
(1.5) 		411.1
(2.7) 		280.8
(-1.4) 		230
(-3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 123.6
(3)
P 		98.1
(1)
P 		108.8
(1.9)
P 		45.3
(-3)
P 		78
B 121.8
(3)
P 		111.3
(2.1)
P 		100.2
(1.1)
P 		53.9
(-3)
P 		68
C 131.4
(3)
P 		126.4
(2.7)
P 		126.3
(2.7)
P 		41.4
(-3)
P 		90
avr 125.6
(3) 		111.9
(2) 		111.8
(1.9) 		46.9
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 46.3
(-3)
P 		129.1
(3)
P 		97.3
(0.7)
P 		98.2
(0.8)
P 		82.3
(-0.4)
P 		53.7
(-2.5)
P 		83
B 117.7
(0.3)
P 		150.2
(3)
P 		77.8
(-3)
P 		102.1
(-1)
P 		115.8
(0.1)
P 		89.4
(-2)
P 		72
C 98.3
(-0.9)
P 		137.2
(3)
P 		90.4
(-1.7)
P 		92.7
(-1.4)
P 		92
(-1.5)
P 		77
(-3)
P 		60
avr 87.4
(-1.7) 		138.8
(3) 		88.5
(-1.6) 		97.7
(-0.8) 		96.7
(-0.9) 		73.4
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186084_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11291
Sequence Type Exemplar sequence
Representative Public ID T07C12.11 NCBI
Target Description T07C12.11 /REP_DB=WormBase Gene ID /WP=CE06393 /TR=Q22277 /GB=CAA98280.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073164 NCBI Caenorhabditis elegans T07C12.11 (T07C12.11) mRNA, complete cds. 11/11 None
T07C12.11 ENSEMBL cdna:known chromosome:CEL140:V:9963019:9965056:-1 gene:T07C12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9963018-9964233(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07C12.11
Entrez Gene 179386 Entrez gene
SwissProt Q22277 EMBL-EBI
WormBase CE35612 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE46660 Hypothetical protein T07C12.11 [Caenorhabditis elegans] emb|CAA98280.2| Hypothetical protein T07C12.11 [Caenorhabditis elegans] ref|NP_505565.2| T07C12.11 [Caenorhabditis elegans] 0.0
blast CAE72290 Hypothetical protein CBG19420 [Caenorhabditis briggsae] 2.0E-62
blast AAF39889 Hypothetical protein H20J04.3 [Caenorhabditis elegans] ref|NP_494766.1| H20J04.3 [Caenorhabditis elegans] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:186084_S_AT
acatcgagttcatcatcttctggtagcaacaataacggacgttttctcgattctccaact
attgatattgaagatgacaaaaagaatctggcactcatttatgacaaatttgttgcgaat
caaacagaaaatgagaaaaaccatagattttcaaacaaacacggaaaagatcttctgttc
tccacaacaaacactttaattgaaaagttagcaactacctcaacagctcccagttcttct
cgaaagcgtaaaccaattcctgtacagattctaccatcttctccacctccacaagaaaag
aacactaaaatcgagctgttagaggatattctcaatgaaccaaatgaagatcaggtatct
ttgttcgtacgttccattgcaagaacattgaatgacttggaccgtgagaagtttgcaatg
gctcgcgtggaaatttcaaaagtcttgtacaaaatcgagtttggagacaatcaatactcc
gaacctgttctcataattaaatgcgtattatttgtgcgtgaaattcagttttctccattc
caagaacgaactcgacaatatttcagcaaaggccatgcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCGAGTTCATCATCTTCTGGTA 58 107 199 Antisense
TAACGGACGTTTTCTCGATTCTCCA 153 637 231 Antisense
GATCTTCTGTTCTCCACAACAAACA 276 419 367 Antisense
AGTTAGCAACTACCTCAACAGCTCC 672 63 404 Antisense
CTCCCAGTTCTTCTCGAAAGCGTAA 259 233 425 Antisense
TGTACAGATTCTACCATCTTCTCCA 647 559 459 Antisense
ATCTTTGTTCGTACGTTCCATTGCA 572 31 555 Antisense
GAAGTTTGCAATGGCTCGCGTGGAA 376 337 606 Antisense
CAATCAATACTCCGAACCTGTTCTC 563 181 666 Antisense
AAATTCAGTTTTCTCCATTCCAAGA 130 115 719 Antisense
ATATTTCAGCAAAGGCCATGCCCCA 626 19 756 Antisense
Sequence Source Affymetrix Proprietary Database