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[186083_at]

Description K08F11.1 /REP_DB=WormBase Gene ID /WP=CE11950 /TR=Q94265 /GB=AAB09159.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 49.1
(-2.1)
A 		73.8
(1.2)
A 		42.2
(-3)
A 		87.2
(3)
A 		45
B 13.3
(-3)
A 		39.4
(0.4)
A 		59.9
(3)
A 		51.5
(1.9)
A 		47
C 55.3
(-2.2)
A 		71.5
(3)
P 		52.8
(-3)
A 		59.5
(-0.9)
A 		19
avr 39.2
(-3) 		61.6
(2) 		51.6
(-0.2) 		66.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 57
(3)
A 		18.7
(-3)
A 		44.3
(1)
A 		56
(2.8)
A 		44.1
(1)
A 		42.4
(0.7)
A 		38
B 32.2
(-3)
A 		32.9
(-2.8)
A 		45.9
(1.4)
A 		50.9
(3)
A 		34.7
(-2.2)
A 		32.2
(-3)
A 		19
C 71.7
(0.2)
P 		51.7
(-2.4)
M 		47.1
(-3)
A 		93.9
(3)
M 		54.8
(-2)
A 		47.6
(-2.9)
A 		47
avr 53.6
(0.5) 		34.4
(-3) 		45.8
(-0.9) 		66.9
(3) 		44.5
(-1.1) 		40.7
(-1.8) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.9
(3)
A 		16
(1.3)
A 		11
(-3)
A 		12.8
(-1.4)
A 		7
B 4.2
(-3)
A 		9.7
(0.4)
A 		13.9
(3)
A 		11
(1.2)
A 		10
C 18.3
(1.7)
A 		20.6
(3)
P 		18.4
(1.8)
A 		10
(-3)
A 		11
avr 13.5
(0.2) 		15.4
(3) 		14.4
(1.5) 		11.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.5
(0.1)
A 		6.6
(-3)
A 		9.6
(-0.6)
A 		14.2
(3)
A 		13.3
(2.3)
A 		10.3
(-0.1)
A 		8
B 11.2
(-2.4)
A 		10.9
(-3)
A 		11.1
(-2.6)
A 		13.5
(1.9)
A 		14.1
(3)
A 		12
(-0.9)
A 		3
C 26.6
(3)
P 		15.8
(-1.4)
M 		12
(-3)
A 		18.9
(-0.2)
M 		17.7
(-0.7)
A 		15.9
(-1.4)
A 		15
avr 16.1
(3) 		11.1
(-2.8) 		10.9
(-3) 		15.5
(2.3) 		15
(1.7) 		12.7
(-0.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10977
Sequence Type Exemplar sequence
Representative Public ID K08F11.1 NCBI
Target Description K08F11.1 /REP_DB=WormBase Gene ID /WP=CE11950 /TR=Q94265 /GB=AAB09159.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068221 NCBI Caenorhabditis elegans K08F11.1 (K08F11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000001915 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4717047:4725304:1 11/11 None
K08F11.1 ENSEMBL cdna:known chromosome:CEL140:IV:4724853:4725304:1 gene:K08F11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001911 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4724858-4725310(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08F11.1
Entrez Gene 187169 Entrez gene
SwissProt Q94265 EMBL-EBI
WormBase CE11950 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09160 Hypothetical protein K08F11.2 [Caenorhabditis elegans] ref|NP_500621.1| K08F11.2 [Caenorhabditis elegans] 0.0
blast AAA98035 Hypothetical protein K08D10.1 [Caenorhabditis elegans] ref|NP_500507.1| K08D10.1 [Caenorhabditis elegans] 0.0
blast NP_490921 Y20F4.5 [Caenorhabditis elegans] gb|AAL00865.1| Hypothetical protein Y20F4.5 [Caenorhabditis elegans] 0.0
blast AAB09159 Hypothetical protein K08F11.1 [Caenorhabditis elegans] ref|NP_500622.1| K08F11.1 [Caenorhabditis elegans] 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186083_AT
tgattcttgcctcccaaagatcgaaaagagcaacttcgccagcggagagtccaatacgat
gtactctgagaaattgtcaatcagaaattgtctgataacaatcagaaattgtctgattgt
ttcacagactgggccaaaacgatctctgcgacccggattctccattgctgcttgccttga
tttggtgcaaaacgttttcggaatcgttcaagcttggcccaacgacttgatggaccgtac
ctcaatgatccaagttaccacagacttcaatgctggctgggttgctgctcgaaacgaggc
aaacgttgctcaattggatgctcttcgtggtcaggctgacaatatcgattccatggccaa
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTCTTGCCTCCCAAAGATCGAA 381 563 21 Antisense
GAGCAACTTCGCCAGCGGAGAGTCC 122 391 48 Antisense
TGGGCCAAAACGATCTCTGCGACCC 127 555 150 Antisense
CATTGCTGCTTGCCTTGATTTGGTG 471 217 183 Antisense
GAATCGTTCAAGCTTGGCCCAACGA 554 329 221 Antisense
GGCCCAACGACTTGATGGACCGTAC 202 543 236 Antisense
GTACCTCAATGATCCAAGTTACCAC 705 457 257 Antisense
AGACTTCAATGCTGGCTGGGTTGCT 446 69 282 Antisense
GCTGGGTTGCTGCTCGAAACGAGGC 295 293 296 Antisense
TGCTCTTCGTGGTCAGGCTGACAAT 493 579 339 Antisense
GACAATATCGATTCCATGGCCAAGA 689 363 358 Antisense
Sequence Source Affymetrix Proprietary Database