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[186081_s_at]

Description F33G12.6 /REP_DB=WormBase Gene ID /WP=CE27152 /TR=Q19990 /GB=AAK31510.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 20      6grp_total > 03      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 1424.3
(3)
P 		898
(-3)
P 		1076.3
(-1)
P 		1324.9
(1.9)
P 		526
B 1471.4
(3)
P 		913.8
(-3)
P 		926.6
(-2.9)
P 		1094.8
(-1.1)
P 		558
C 1382.4
(3)
P 		989
(-2.4)
P 		941.3
(-3)
P 		1020.7
(-1.9)
P 		441
avr 1426
(3) 		933.6
(-3) 		981.4
(-2.4) 		1146.8
(-0.4) 		492

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 718
1 2 3 4 5 6 range
A 1367.3
(3)
P 		1304.2
(2.4)
P 		724.6
(-3)
P 		1237.2
(1.8)
P 		950.6
(-0.9)
P 		859.6
(-1.7)
P 		643
B 1442.2
(3)
P 		1235.5
(1.3)
P 		877.7
(-1.7)
P 		1049.4
(-0.3)
P 		923.8
(-1.4)
P 		729
(-3)
P 		713
C 1194.7
(1.9)
P 		1271.9
(3)
P 		1054.1
(-0.2)
P 		1159.1
(1.3)
P 		1025
(-0.7)
P 		866.1
(-3)
P 		406
avr 1334.7
(3) 		1270.5
(2.3) 		885.5
(-2.2) 		1148.6
(0.8) 		966.5
(-1.3) 		818.2
(-3) 		517
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 518.6
(3)
P 		194.9
(-3)
P 		281.4
(-1.4)
P 		193.9
(-3)
P 		325
B 469.2
(3)
P 		225.7
(-2.7)
P 		214.7
(-3)
P 		233.3
(-2.6)
P 		255
C 457.6
(3)
P 		284.4
(-0.6)
P 		328.1
(0.3)
P 		172.1
(-3)
P 		286
avr 481.8
(3) 		235
(-2.3) 		274.7
(-1.4) 		199.8
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 252
(-1.2)
P 		463.8
(3)
P 		157.8
(-3)
P 		313.8
(0.1)
P 		286.8
(-0.5)
P 		209.3
(-2)
P 		306
B 501.8
(3)
P 		411.2
(1.1)
P 		213.1
(-3)
P 		278
(-1.7)
P 		375.3
(0.4)
P 		271.8
(-1.8)
P 		289
C 442.8
(3)
P 		388.1
(1.4)
P 		268.3
(-2)
P 		233.1
(-3)
P 		331.7
(-0.2)
P 		289.9
(-1.4)
P 		210
avr 398.9
(2.4) 		421
(3) 		213.1
(-3) 		275
(-1.2) 		331.3
(0.4) 		257
(-1.7) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186081_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4255
Sequence Type Exemplar sequence
Representative Public ID F33G12.6 NCBI
Target Description F33G12.6 /REP_DB=WormBase Gene ID /WP=CE27152 /TR=Q19990 /GB=AAK31510.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026967(11), NM_001026966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026967 NCBI Caenorhabditis elegans F33G12.6b (F33G12.6) mRNA, complete cds. 11/11 None
NM_001026966 NCBI Caenorhabditis elegans F33G12.6a (F33G12.6) mRNA, complete cds. 11/11 None
SNAP00000044046 ENSEMBL cdna:SNAP chromosome:CEL140:II:5052760:5053644:1 9/11 None
GENEFINDER00000044057 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5052760:5053644:1 9/11 None
F33G12.6b ENSEMBL cdna:known chromosome:CEL140:II:5049899:5053839:1 gene:F33G12.6 11/11 None
F33G12.6a ENSEMBL cdna:known chromosome:CEL140:II:5049906:5053941:1 gene:F33G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5049618-5053642(+) 100.0 100.0
Public Domain and Genome References
Ensembl F33G12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81193 Hypothetical protein F33G12.6b [Caenorhabditis elegans] ref|NP_001022138.1| F33G12.6b [Caenorhabditis elegans] 0.0
blast AAK31510 Hypothetical protein F33G12.6a [Caenorhabditis elegans] ref|NP_001022137.1| F33G12.6a [Caenorhabditis elegans] 0.0
blast T16245 hypothetical protein F33G12.6 - Caenorhabditis elegans 0.0
blast CAE59028 Hypothetical protein CBG02308 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186081_S_AT
ggtggactccaagcggatcagtctcaactgatttcatctacatcagtgagctcttctgaa
gcaatggatacagaacctactgtagctctgaagcttgaaaactcaacattcacaagagtt
gcatcggtgcaatgtgtcgagcatcttattggggaaccgcgtggaattgagcaagttgaa
atgttaactcaagaaccaccgccgtcaccaatgagatcaaaacctgaacagttgatatta
catgatttggtcgataaacggaaaaaggagaagaataataatacacctgtagtagcaaac
ggaattgaaaatcgaccagttagcccatatgagcaattaccgataagctcaagagattct
ggaaaacgtaggaagaagcatggcagaggatccatgggacgtcatactttgggagttgat
gtccaatggctcaagaagcttgtgaccaagaaagaagatcaaaaaactgctgacgacata
agaggtgatgtcagcttgagttccgcaaatgccgatcgtaacacacttcgccaacgaatc
agaagcatgttgggatcgaatcgtacattatccaatgttgaccaatccactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGACTCCAAGCGGATCAGTCTC 213 499 1699 Antisense
AGTCTCAACTGATTTCATCTACATC 647 61 1718 Antisense
GCATCGGTGCAATGTGTCGAGCATC 354 309 1819 Antisense
GTCGAGCATCTTATTGGGGAACCGC 364 473 1834 Antisense
AATGTTAACTCAAGAACCACCGCCG 136 165 1878 Antisense
GAAAATCGACCAGTTAGCCCATATG 16 355 2005 Antisense
GAGGATCCATGGGACGTCATACTTT 427 403 2084 Antisense
GTGATGTCAGCTTGAGTTCCGCAAA 692 483 2183 Antisense
GAGTTCCGCAAATGCCGATCGTAAC 524 397 2196 Antisense
GATCGTAACACACTTCGCCAACGAA 148 417 2212 Antisense
TATCCAATGTTGACCAATCCACTAT 409 657 2267 Antisense
Sequence Source Affymetrix Proprietary Database