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[186080_at]

Description F54D10.4 /REP_DB=WormBase Gene ID /WP=CE19454 /TR=Q9TZ89 /GB=AAC68784.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 52.2
(-3)
A 		53.7
(-2.9)
A 		65.6
(-2)
A 		132.9
(3)
A 		81
B 75.8
(3)
A 		63.7
(-1.3)
A 		68.8
(0.5)
A 		58.8
(-3)
A 		17
C 88
(0.4)
M 		74.8
(-2.3)
A 		71.5
(-3)
A 		100.5
(3)
A 		29
avr 72
(-1.6) 		64.1
(-3) 		68.6
(-2.2) 		97.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 49.1
(-1.1)
A 		63.9
(0.8)
A 		81.5
(3)
A 		34.4
(-3)
A 		57
(-0.1)
A 		50.3
(-1)
A 		47
B 57.4
(3)
A 		40.8
(1.1)
A 		18.4
(-1.5)
A 		4.9
(-3)
A 		20.9
(-1.2)
A 		29.3
(-0.2)
A 		53
C 10.8
(-3)
A 		33.3
(-0.8)
A 		49.7
(0.7)
A 		73.5
(3)
A 		59.6
(1.7)
A 		31.6
(-1)
A 		63
avr 39.1
(-2.1) 		46
(1.2) 		49.9
(3) 		37.6
(-2.8) 		45.8
(1.1) 		37.1
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19
(2.6)
A 		11.7
(-3)
A 		17.1
(1.2)
A 		19.5
(3)
A 		8
B 24.2
(3)
A 		15.7
(-1.4)
A 		16
(-1.2)
A 		12.5
(-3)
A 		12
C 29.1
(3)
M 		21.5
(-0.7)
A 		24.9
(0.9)
A 		16.9
(-3)
A 		12
avr 24.1
(3) 		16.3
(-3) 		19.3
(-0.7) 		16.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9
(-2.9)
A 		22.7
(3)
A 		17.7
(0.9)
A 		8.7
(-3)
A 		17.2
(0.6)
A 		12.2
(-1.5)
A 		14
B 20
(3)
A 		13.6
(0.9)
A 		4.5
(-2)
A 		1.3
(-3)
A 		8.5
(-0.7)
A 		10.9
(0.1)
A 		19
C 4
(-3)
A 		10.2
(-0.6)
A 		12.7
(0.4)
A 		14.8
(1.2)
A 		19.3
(3)
A 		10.6
(-0.4)
A 		15
avr 11
(-0.8) 		15.5
(3) 		11.6
(-0.3) 		8.3
(-3) 		15
(2.6) 		11.2
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5867
Sequence Type Exemplar sequence
Representative Public ID F54D10.4 NCBI
Target Description F54D10.4 /REP_DB=WormBase Gene ID /WP=CE19454 /TR=Q9TZ89 /GB=AAC68784.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062255
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030981 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3805359:3807046:-1 None
SNAP00000030969 ENSEMBL cdna:SNAP chromosome:CEL140:II:3805359:3807046:-1 None
NM_062255 NCBI Caenorhabditis elegans F54D10.4 (F54D10.4) mRNA, complete cds. None
F54D10.4 ENSEMBL cdna:known chromosome:CEL140:II:3805984:3807046:-1 gene:F54D10.4 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3805357-3807045(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D10.4
Entrez Gene 186233 Entrez gene
SwissProt Q9TZ89 EMBL-EBI
WormBase CE35977 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68784 Hypothetical protein F54D10.4 [Caenorhabditis elegans] ref|NP_494656.2| F54D10.4 [Caenorhabditis elegans] 1.0E-103
blast AAC68784 Hypothetical protein F54D10.4 [Caenorhabditis elegans] ref|NP_494656.2| F54D10.4 [Caenorhabditis elegans] 2.0E-60
Sequence
Target Sequence 
>C. ELEGANS:186080_AT
aaagtctgaaacaagccgagcccaataaagtgtgcatctccagaggaagccagaccgcga
aaaaatatgatcatttgaaaaaaatcacgctgggcgaatctttttgctcatatcgattcg
ataaaatgctccaacaaggatcacgagaacagttttcaggatttgagcacacgtttagcg
aatttagagaatgttatcgagaaaaattttgcagggaaatatcaagactgtctgtcggcc
aaattgccaagtcaagagatgaactgacgtcgacggtgaaaaatctgagttcgatttaca
aagattttgtggatcttcgtttcggttcaagccttgtgcggcgatatgatttggaaaaga
ttatggccaaccagaagctgattcaagagaaattagcggagctacaagccggtcaaacct
catttgccgaattgatttcttcaaagtacgaagaattcatggatcaaagtacattctgga
aagttgctgaagtttcaatggtgatcgttctgatttgggccattttcaagaaaaaaggag
ccagtccgaaactcgagatcgtcaaagctcctccaatcaggcttccacctgtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTCTGAAACAAGCCGAGCCCAA 619 121 344 Antisense
AGCCCAATAAAGTGTGCATCTCCAG 577 81 362 Antisense
GCATCTCCAGAGGAAGCCAGACCGC 664 309 377 Antisense
ACGCTGGGCGAATCTTTTTGCTCAT 404 89 430 Antisense
AAGACTGTCTGTCGGCCAAATTGCC 199 153 567 Antisense
TGTGGATCTTCGTTTCGGTTCAAGC 291 553 651 Antisense
GGTTCAAGCCTTGTGCGGCGATATG 606 505 667 Antisense
GATCGTTCTGATTTGGGCCATTTTC 224 417 846 Antisense
GGAGCCAGTCCGAAACTCGAGATCG 456 521 880 Antisense
AACTCGAGATCGTCAAAGCTCCTCC 586 141 893 Antisense
TCCAATCAGGCTTCCACCTGTCAAA 383 587 915 Antisense
Sequence Source Affymetrix Proprietary Database