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[186079_at]

Description ZC239.12 /REP_DB=WormBase Gene ID /WP=CE15132 /TR=P91555 /GB=AAB37951.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 12      6grp_cgc > 80      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 8.2
(-0.3)
A 		16.1
(3)
A 		1.8
(-3)
A 		13.4
(1.9)
A 		14
B 3
(-2.3)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		16.6
(3)
A 		15
C 15.1
(-0.8)
A 		1.1
(-3)
A 		1.7
(-2.9)
A 		39.4
(3)
A 		38
avr 8.8
(-1) 		6.3
(-1.7) 		1.6
(-3) 		23.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 19.2
(3)
A 		13.5
(0.8)
A 		12.5
(0.5)
A 		12.8
(0.6)
A 		3.4
(-3)
A 		3.6
(-2.9)
A 		16
B 25.5
(3)
M 		1.3
(-2.8)
A 		17
(1)
A 		0.6
(-3)
A 		12.9
(-0)
A 		4.3
(-2.1)
A 		25
C 28.8
(1.7)
A 		9.8
(-1.6)
A 		36.4
(3)
A 		2.2
(-2.9)
A 		1.4
(-3)
A 		13.9
(-0.9)
A 		35
avr 24.5
(3) 		8.2
(-2.1) 		22
(2.2) 		5.2
(-3) 		5.9
(-2.8) 		7.3
(-2.3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3
(2)
A 		3.5
(3)
A 		0.5
(-3)
A 		2
(0)
A 		3
B 1
(-1.7)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3.5
(3)
A 		3
C 5
(1.5)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		6.6
(3)
A 		6
avr 3
(1.3) 		1.4
(-1.5) 		0.5
(-3) 		4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.5
(1)
A 		4.8
(3)
A 		2.7
(-0.2)
A 		3.3
(0.7)
A 		1
(-2.8)
A 		0.9
(-3)
A 		4
B 8.9
(3)
M 		0.4
(-2.9)
A 		4.1
(-0.3)
A 		0.2
(-3)
A 		5.2
(0.4)
A 		1.6
(-2)
A 		9
C 10.7
(3)
A 		3
(-1.5)
A 		9.3
(2.2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		4.7
(-0.5)
A 		10
avr 7.7
(3) 		2.7
(-1.7) 		5.4
(0.8) 		1.3
(-3) 		2.2
(-2.2) 		2.4
(-2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4442
Sequence Type Exemplar sequence
Representative Public ID ZC239.12 NCBI
Target Description ZC239.12 /REP_DB=WormBase Gene ID /WP=CE15132 /TR=P91555 /GB=AAB37951.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062072 NCBI Caenorhabditis elegans ZC239.12 (ZC239.12) mRNA, complete cds. 11/11 None
SNAP00000024292 ENSEMBL cdna:SNAP chromosome:CEL140:II:3207863:3209390:-1 9/11 None
GENEFINDER00000024314 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3207863:3208746:-1 10/11 None
ZC239.12 ENSEMBL cdna:known chromosome:CEL140:II:3207863:3208746:-1 gene:ZC239.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3207861-3208745(-) 97.28 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-35
Ensembl ZC239.12
Entrez Gene 191123 Entrez gene
SwissProt P91555 EMBL-EBI
WormBase CE15132 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37951 Hypothetical protein ZC239.12 [Caenorhabditis elegans] ref|NP_494473.1| ZC239.12 [Caenorhabditis elegans] 1.0E-140
blast AAB37951 Hypothetical protein ZC239.12 [Caenorhabditis elegans] ref|NP_494473.1| ZC239.12 [Caenorhabditis elegans] 1.0E-125
blast NP_494320 F22E5.6 [Caenorhabditis elegans] gb|AAB66172.2| Hypothetical protein F22E5.6 [Caenorhabditis elegans] 1.0E-117
blast NP_494320 F22E5.6 [Caenorhabditis elegans] gb|AAB66172.2| Hypothetical protein F22E5.6 [Caenorhabditis elegans] 1.0E-114
blast AAB37951 Hypothetical protein ZC239.12 [Caenorhabditis elegans] ref|NP_494473.1| ZC239.12 [Caenorhabditis elegans] 1.0E-101
blast NP_494320 F22E5.6 [Caenorhabditis elegans] gb|AAB66172.2| Hypothetical protein F22E5.6 [Caenorhabditis elegans] 5.0E-95
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 2.0E-47
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 5.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.5E-42
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 7.3E-22
Sequence
Target Sequence 
>C. ELEGANS:186079_AT
gaaactgagattcctatccaaaaagacgactcaaattgcattttcatagaccgatctccg
aggcatttcgaaaaaattctaaattacctgagagatggtgcagacgtggatttacttcca
gaatctgaaaaagaagttcgagaaattttgaaagaagctcaattttatctaaaagaaggt
ttaatggagctttgcaagaggtcaacttgtaaaatgcggacgtttgattcttatcacgat
ttgctgaagttgatagcggaagctggaaaggttagtgataaagaaatatttgtagtttgt
agtttatatttcgatttcttctttcagccggttctagtgatattctatctggtcaaagac
aatcgaattgttcacattccctcaaatttcaaaattcgagattttttggagaagcaccac
ggaatgttggagatatatttcaaagaatccccatacgaaacaatccaacaaaatccatca
caatttttacctcctggccgtgaggaagcagctccgtcatggacctactgcttctataat
gctccaaaattaccgttcagatttactatttcgtttttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGAGATTCCTATCCAAAAAG 276 357 118 Antisense
CGATCTCCGAGGCATTTCGAAAAAA 297 247 169 Antisense
ATGGAGCTTTGCAAGAGGTCAACTT 21 49 301 Antisense
AAATGCGGACGTTTGATTCTTATCA 680 117 329 Antisense
GATTCTTATCACGATTTGCTGAAGT 668 431 343 Antisense
TATATTTCGATTTCTTCTTTCAGCC 586 661 422 Antisense
GCCGGTTCTAGTGATATTCTATCTG 32 285 444 Antisense
CGAATTGTTCACATTCCCTCAAATT 571 253 481 Antisense
GGAGAAGCACCACGGAATGTTGGAG 500 517 525 Antisense
GAAACAATCCAACAAAATCCATCAC 398 355 574 Antisense
TCAGATTTACTATTTCGTTTTTGGA 540 623 674 Antisense
Sequence Source Affymetrix Proprietary Database