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[186078_at]

Description Y17G9B.9 /REP_DB=WormBase Gene ID /WP=CE24188 /TR=Q9N575 /GB=AAF60450.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 52.8
(-3)
A 		85.2
(0.2)
A 		84.6
(0.1)
A 		114.4
(3)
M 		62
B 61.7
(-3)
A 		107
(2.8)
A 		73.2
(-1.5)
A 		108.6
(3)
P 		47
C 61.5
(-3)
A 		90.5
(-0.4)
A 		72.5
(-2)
A 		128.3
(3)
M 		67
avr 58.7
(-3) 		94.2
(0.6) 		76.8
(-1.1) 		117.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 73.8
(-2.9)
A 		70.4
(-2.9)
A 		67.2
(-3)
A 		104.8
(-2.2)
A 		236.2
(0.4)
M 		362.8
(3)
P 		296
B 31
(-3)
A 		49.6
(-2.6)
A 		76.1
(-2.1)
A 		129
(-1)
A 		235.4
(1.1)
P 		327.3
(3)
P 		296
C 57.9
(-3)
A 		76.7
(-2.7)
A 		67.1
(-2.8)
A 		154.9
(-1.3)
M 		256.7
(0.5)
P 		397
(3)
P 		339
avr 54.2
(-3) 		65.6
(-2.8) 		70.1
(-2.7) 		129.6
(-1.5) 		242.8
(0.7) 		362.4
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 19.2
(-0.2)
A 		18.5
(-1)
A 		22.1
(3)
A 		16.7
(-3)
M 		5
B 19.7
(-1.3)
A 		26.4
(3)
A 		17
(-3)
A 		23.1
(0.9)
P 		9
C 20.4
(-3)
A 		26
(3)
A 		25.3
(2.3)
A 		21.6
(-1.7)
M 		6
avr 19.8
(-3) 		23.6
(3) 		21.5
(-0.3) 		20.5
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 13.6
(-3)
A 		25.1
(-2.1)
A 		14.6
(-2.9)
A 		26.6
(-2)
A 		71.3
(1.6)
M 		88.3
(3)
P 		75
B 10.8
(-3)
A 		16.5
(-2.7)
A 		18.5
(-2.6)
A 		34.2
(-1.7)
A 		95.7
(1.6)
P 		122
(3)
P 		111
C 21.5
(-2.8)
A 		23.4
(-2.7)
A 		17.1
(-3)
A 		31.2
(-2.3)
M 		83.1
(0.4)
P 		132.9
(3)
P 		116
avr 15.3
(-3) 		21.7
(-2.6) 		16.7
(-2.9) 		30.7
(-2.1) 		83.4
(1.1) 		114.4
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11228
Sequence Type Exemplar sequence
Representative Public ID Y17G9B.9 NCBI
Target Description Y17G9B.9 /REP_DB=WormBase Gene ID /WP=CE24188 /TR=Q9N575 /GB=AAF60450.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068235 NCBI Caenorhabditis elegans Y17G9B.9 (Y17G9B.9) mRNA, complete cds. 11/11 None
SNAP00000043799 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4759231:4760419:-1 11/11 None
GENEFINDER00000043814 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4759231:4760418:-1 11/11 None
Y17G9B.9 ENSEMBL cdna:known chromosome:CEL140:IV:4758989:4760419:-1 gene:Y17G9B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4759236-4760424(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9B.9
Entrez Gene 189470 Entrez gene
SwissProt Q9N575 EMBL-EBI
WormBase CE24188 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500636 Y17G9B.9 [Caenorhabditis elegans] gb|AAF60450.1| Hypothetical protein Y17G9B.9 [Caenorhabditis elegans] 1.0E-167
blast CAB07219 Hypothetical protein H02I12.5 [Caenorhabditis elegans] ref|NP_502151.1| H02I12.5 [Caenorhabditis elegans] 1.0E-141
blast CAB60601 Hypothetical protein Y62E10A.14 [Caenorhabditis elegans] ref|NP_502583.1| Y62E10A.14 [Caenorhabditis elegans] 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:186078_AT
caacgaccacattattttgccgctcagtgccggaagctgtcggtcgaggatatctctagt
ttgattctgacttctctcctgaccgaaccgaaggaaacgggacaaaatgtggctcgattt
gctatccagacaaccaatgaaatgtcgttccaaacgttatttgcattgctcgaacaacta
gagaaggaaaacgaaaggttccaaatgacagatagctttgtggttgcaaccctgatccga
tcacagacgaagagaactatcactcgtctcctgagaaccacacactgccgggaatacgga
aatctcgagccaggactcgattcacaaggccggctgatgacttcgactgcatcaatcacg
tgttcaattcgaggaaagcgccacgtggaaacgaggatcgtgtacaagaacaactcgagc
accagggatcctttccgaagaaatagatacatcgaattggagcaaacggtgaagtgcatg
aaccggcgagtgctgattgtcgaagagccagtcgaaatccacgaattcgaggtcgaaaag
gatatgatctcgctggaaaacggaattgcgccagtcgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGACCACATTATTTTGCCGCTC 376 187 424 Antisense
TTATTTTGCCGCTCAGTGCCGGAAG 455 673 435 Antisense
GTGCCGGAAGCTGTCGGTCGAGGAT 451 477 450 Antisense
TTCTCTCCTGACCGAACCGAAGGAA 185 687 495 Antisense
ATGTGGCTCGATTTGCTATCCAGAC 83 51 530 Antisense
TTTGTGGTTGCAACCCTGATCCGAT 320 667 640 Antisense
AAGAGAACTATCACTCGTCTCCTGA 55 153 673 Antisense
TCACAAGGCCGGCTGATGACTTCGA 379 627 745 Antisense
ACAAGAACAACTCGAGCACCAGGGA 573 113 827 Antisense
GAACCGGCGAGTGCTGATTGTCGAA 701 345 903 Antisense
AAAACGGAATTGCGCCAGTCGACGA 152 129 980 Antisense
Sequence Source Affymetrix Proprietary Database