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[186077_at]

Description K02H11.4 /REP_DB=WormBase Gene ID /WP=CE18002 /TR=O61984 /GB=AAC17784.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 27.3
(-0.3)
A 		48
(3)
A 		41.2
(1.9)
A 		9.9
(-3)
A 		38
B 35.8
(2.5)
A 		38.6
(3)
A 		6.1
(-3)
A 		37.7
(2.8)
A 		33
C 29.2
(-3)
A 		53.5
(2.5)
A 		30.1
(-2.8)
A 		55.5
(3)
A 		26
avr 30.8
(-1.6) 		46.7
(3) 		25.8
(-3) 		34.4
(-0.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 55
(2.8)
A 		43.5
(1.4)
A 		6.8
(-3)
A 		56.9
(3)
A 		26.8
(-0.6)
A 		26.2
(-0.7)
A 		50
B 42.1
(2.9)
A 		29
(0.9)
A 		42.6
(3)
A 		3.1
(-3)
A 		18.2
(-0.7)
A 		36.4
(2.1)
A 		40
C 28.8
(-0.5)
A 		44.1
(2.6)
A 		18.9
(-2.5)
A 		46
(3)
A 		16.2
(-3)
A 		17.2
(-2.8)
A 		30
avr 42
(3) 		38.9
(2.1) 		22.8
(-2.3) 		35.3
(1.1) 		20.4
(-3) 		26.6
(-1.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.9
(2.4)
A 		10.4
(2.7)
A 		10.8
(3)
A 		1.4
(-3)
A 		9
B 11.4
(3)
A 		9.5
(1.9)
A 		1.4
(-3)
A 		8
(1)
A 		10
C 9.7
(-2.7)
A 		15.4
(3)
A 		10.5
(-1.9)
A 		9.4
(-3)
A 		6
avr 10.3
(1.4) 		11.8
(3) 		7.6
(-1.6) 		6.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.1
(0.7)
A 		15.5
(3)
A 		1.5
(-3)
A 		14.4
(2.5)
A 		8.1
(-0.2)
A 		6.4
(-0.9)
A 		14
B 14.7
(3)
A 		9.7
(0.8)
A 		10.3
(1.1)
A 		0.8
(-3)
A 		7.4
(-0.2)
A 		13.6
(2.5)
A 		14
C 10.7
(1.1)
A 		13.5
(3)
A 		4.8
(-3)
A 		9.2
(0)
A 		5.2
(-2.7)
A 		5.8
(-2.3)
A 		9
avr 11.8
(2.1) 		12.9
(3) 		5.5
(-3) 		8.1
(-0.9) 		6.9
(-1.9) 		8.6
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15308
Sequence Type Exemplar sequence
Representative Public ID K02H11.4 NCBI
Target Description K02H11.4 /REP_DB=WormBase Gene ID /WP=CE18002 /TR=O61984 /GB=AAC17784.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071038 NCBI Caenorhabditis elegans K02H11.4 (K02H11.4) mRNA, complete cds. 11/11 None
SNAP00000029158 ENSEMBL cdna:SNAP chromosome:CEL140:V:1528653:1531088:-1 11/11 None
K02H11.4 ENSEMBL cdna:known chromosome:CEL140:V:1528653:1530609:-1 gene:K02H11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029163 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1528652-1530609(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02H11.4
Entrez Gene 186913 Entrez gene
SwissProt O61984 EMBL-EBI
WormBase CE18002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17784 Hypothetical protein K02H11.4 [Caenorhabditis elegans] ref|NP_503439.1| K02H11.4 [Caenorhabditis elegans] 0.0
blast CAE62482 Hypothetical protein CBG06584 [Caenorhabditis briggsae] 0.0
blast CAE61109 Hypothetical protein CBG04866 [Caenorhabditis briggsae] 1.0E-163
blast CAE62482 Hypothetical protein CBG06584 [Caenorhabditis briggsae] 1.0E-163
blast CAE61109 Hypothetical protein CBG04866 [Caenorhabditis briggsae] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.7E-11
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503439.1 1 12-34
K02H11.4 1 12-34
SNAP00000029158 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186077_AT
agcctaatatttctgacttccacatgatagaacagttcagtcattcgtggtttgcaaaca
cacaggcaacaggaaaaattgtggcacggcccagcgatctgaattctatgtggattcacc
gatcattcaacgtgccggataaaaactttcaagttgtaagtcacaactttttcattcatc
tacagagacctgttgatactgatggccaggacccgatcacttacgagatgagatctttct
cgattgccaagcatttaaaattgaatgcatcagttatgcaaccagttcaagaggattttg
taaaagttctgaattcatcacgttatcaaaaaataactgccaaattaccaaaaaatactt
actattttccaattttgtttcgatgttactacgaaaaatactacaatgctcaggatgaca
cgtgcccaaatggagaagactgtttgatacctcaacgttccgacctcccttgtattcact
cggatgcagactataagtcaggaccttctatgacccctgtcacatttcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCTAATATTTCTGACTTCCACAT 415 83 1061 Antisense
ACAGTTCAGTCATTCGTGGTTTGCA 526 107 1092 Antisense
ACGGCCCAGCGATCTGAATTCTATG 39 97 1146 Antisense
GATTCACCGATCATTCAACGTGCCG 370 431 1173 Antisense
AAGTCACAACTTTTTCATTCATCTA 378 157 1218 Antisense
TGATACTGATGGCCAGGACCCGATC 395 563 1254 Antisense
AGATCTTTCTCGATTGCCAAGCATT 131 67 1291 Antisense
TGCTCAGGATGACACGTGCCCAAAT 254 579 1467 Antisense
GACTGTTTGATACCTCAACGTTCCG 406 373 1498 Antisense
CTCCCTTGTATTCACTCGGATGCAG 471 233 1525 Antisense
CTATGACCCCTGTCACATTTCACTA 321 223 1568 Antisense
Sequence Source Affymetrix Proprietary Database