[Home] | [Total List]

[186076_at]

Description Y71A12B.O /REP_DB=WormBase Gene ID /WP=CE24595 /TR=Q9NEN3 /GB=CAB81999.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 61.4
(-2.2)
A 		57.2
(-3)
A 		61.8
(-2.2)
A 		90.6
(3)
A 		33
B 89.2
(3)
A 		86.7
(2.7)
A 		64.1
(-0.3)
A 		43.9
(-3)
A 		45
C 74.3
(-0.7)
A 		57.1
(-2.3)
A 		48.7
(-3)
A 		116.3
(3)
A 		68
avr 75
(1) 		67
(-0.9) 		58.2
(-3) 		83.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 104.1
(3)
A 		68
(-0.9)
A 		49.1
(-3)
A 		55.1
(-2.3)
A 		60.4
(-1.8)
A 		53.3
(-2.5)
A 		55
B 24.9
(-1.8)
A 		60.3
(1.1)
A 		73.2
(2.2)
A 		83.1
(3)
A 		10
(-3)
A 		45.7
(-0.1)
M 		73
C 59.2
(2.3)
A 		53.4
(1.6)
A 		66
(3)
A 		10.2
(-3)
A 		33.7
(-0.5)
A 		48.1
(1.1)
A 		56
avr 62.7
(3) 		60.6
(2.5) 		62.8
(3) 		49.5
(0.2) 		34.7
(-3) 		49
(0.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.4
(3)
A 		12.4
(-3)
A 		16.2
(-0.7)
A 		13.3
(-2.5)
A 		10
B 28.4
(3)
A 		21.4
(0.8)
A 		14.9
(-1.2)
A 		9.3
(-3)
A 		19
C 24.6
(3)
A 		16.4
(-3)
A 		17
(-2.6)
A 		19.6
(-0.7)
A 		8
avr 25.1
(3) 		16.7
(-1.6) 		16
(-2) 		14.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 19.2
(0.8)
A 		24.2
(3)
A 		10.7
(-3)
A 		14
(-1.5)
A 		18.2
(0.3)
A 		13
(-2)
A 		14
B 8.7
(-1.5)
A 		20.1
(2.4)
A 		17.8
(1.6)
A 		22
(3)
A 		4.1
(-3)
A 		17
(1.3)
M 		18
C 22
(3)
A 		16.3
(1.3)
A 		16.8
(1.4)
A 		2
(-3)
A 		10.9
(-0.3)
A 		16.1
(1.2)
A 		20
avr 16.6
(0.6) 		20.2
(3) 		15.1
(-0.4) 		12.7
(-1.9) 		11.1
(-3) 		15.4
(-0.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18771
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.O NCBI
Target Description Y71A12B.O /REP_DB=WormBase Gene ID /WP=CE24595 /TR=Q9NEN3 /GB=CAB81999.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028150, NM_001028287
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038408 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13977962:13978995:1 11/11 None
Y71A12B.14 ENSEMBL cdna:pseudogene chromosome:CEL140:I:13977962:13978995:1 gene:Y71A12B.14 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028287 2/11 Cross Hyb Matching Probes None
SNAP00000038376 5/11 Cross Hyb Matching Probes None
SNAP00000011900 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011911 2/11 Cross Hyb Matching Probes None
SNAP00000019405 1/11 Cross Hyb Matching Probes None
Y38H8A.7 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13977892-13978926(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y71A12B.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79219 Hypothetical protein M117.6 [Caenorhabditis elegans] ref|NP_001023321.1| M117.6 [Caenorhabditis elegans] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:186076_AT
cggcgtggcaatggactggaggaggaggagacaccaaaacgccctcccttcaacaatttt
cttgtggcaaaagaagagaaagatgaagacgatgaatacgaggaagccggtgaaacaagc
aacacctaccaatcgggaatttcggatgacgacgatgaaggccgggcaaaccatcacgtc
aatggcacttgccctatccgaatgggaaaggaattggtgcgaactgcgccgcattcgatt
ggtcgcttcaacaaaaaactttcggaatcgtccgttcgaactatagactgggatttcaaa
gagcttaggaaaatcgcggaaaattccaagtcaaaggtgaacagaaacaattcctccata
gctcctccacaccttcagtgtccacccaaattcggtgaatcatcagattcttcaaggaag
acttctcaattggcctatcagcgttctttacaatattctacatgttgtagccggattcga
atgacagttcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCGTGGCAATGGACTGGAGGAGG 613 241 55 Antisense
ATGAAGGCCGGGCAAACCATCACGT 600 43 209 Antisense
ACCATCACGTCAATGGCACTTGCCC 137 87 224 Antisense
GGCACTTGCCCTATCCGAATGGGAA 197 525 238 Antisense
AATTGGTGCGAACTGCGCCGCATTC 194 179 266 Antisense
CCGCATTCGATTGGTCGCTTCAACA 150 263 283 Antisense
TGGTCGCTTCAACAAAAAACTTTCG 170 491 294 Antisense
GGAATCGTCCGTTCGAACTATAGAC 114 533 318 Antisense
ACAGAAACAATTCCTCCATAGCTCC 232 109 395 Antisense
TTCAGTGTCCACCCAAATTCGGTGA 584 679 428 Antisense
AGCCGGATTCGAATGACAGTTCCCG 619 81 523 Antisense
Sequence Source Affymetrix Proprietary Database