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[186075_at]

Description F52C12.3 /REP_DB=WormBase Gene ID /WP=CE19436 /TR=Q9TXV5 /GB=AAC68961.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 52      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 159.6
(2.1)
A 		183.5
(3)
A 		153
(1.9)
A 		18.5
(-3)
A 		165
B 133.7
(2.7)
A 		123.6
(2.1)
A 		138.4
(3)
A 		35.3
(-3)
A 		103
C 134.4
(1.7)
A 		149.8
(3)
A 		97.9
(-1.4)
A 		78.9
(-3)
A 		71
avr 142.6
(2.5) 		152.3
(3) 		129.8
(1.8) 		44.2
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 116.1
(2.7)
A 		118.2
(3)
A 		78
(-3)
A 		91.4
(-1)
A 		112
(2.1)
A 		97.2
(-0.1)
A 		40
B 140.8
(3)
A 		90.7
(-2.7)
A 		87.6
(-3)
A 		104.2
(-1.1)
A 		126
(1.3)
A 		130.5
(1.8)
A 		53
C 118.4
(0.2)
A 		119.1
(0.3)
A 		90.6
(-3)
A 		103.7
(-1.5)
A 		142.4
(3)
A 		104.3
(-1.4)
A 		52
avr 125.1
(2.8) 		109.3
(0.5) 		85.4
(-3) 		99.8
(-0.9) 		126.8
(3) 		110.7
(0.7) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 58.1
(3)
A 		39.8
(1)
A 		40
(1)
A 		2.7
(-3)
A 		55
B 42.6
(3)
A 		30.5
(0.9)
A 		32.1
(1.2)
A 		7.5
(-3)
A 		35
C 44.5
(3)
A 		43.1
(2.7)
A 		34.1
(1)
A 		13.3
(-3)
A 		31
avr 48.4
(3) 		37.8
(1.4) 		35.4
(1.1) 		7.8
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 21.4
(-1.9)
A 		42
(3)
A 		17
(-3)
A 		23.2
(-1.5)
A 		33.8
(1)
A 		23.7
(-1.4)
A 		25
B 49
(2.6)
A 		30.2
(-1.2)
A 		21.3
(-3)
A 		27.6
(-1.7)
A 		51.2
(3)
A 		48.7
(2.5)
A 		30
C 43.9
(2.5)
A 		36.3
(0.7)
A 		23.1
(-2.5)
A 		20.9
(-3)
A 		46.1
(3)
A 		34.9
(0.3)
A 		25
avr 38.1
(1.6) 		36.2
(1.1) 		20.5
(-3) 		23.9
(-2.1) 		43.7
(3) 		35.8
(1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11001
Sequence Type Exemplar sequence
Representative Public ID F52C12.3 NCBI
Target Description F52C12.3 /REP_DB=WormBase Gene ID /WP=CE19436 /TR=Q9TXV5 /GB=AAC68961.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067745 NCBI Caenorhabditis elegans F52C12.3 (F52C12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000001430 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1948197:1953100:1 11/11 None
F52C12.3 ENSEMBL cdna:known chromosome:CEL140:IV:1948197:1953232:1 gene:F52C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1948801-1953106(+) 97.12 97.12
Public Domain and Genome References
Gene Title
Ensembl F52C12.3
Entrez Gene 176994 Entrez gene
SwissProt Q9TXV5 EMBL-EBI
WormBase CE19436 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68961 Hypothetical protein F52C12.3 [Caenorhabditis elegans] ref|NP_500146.1| F52C12.3 [Caenorhabditis elegans] 1.0E-177
blast CAE65558 Hypothetical protein CBG10548 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:186075_AT
tacagtacccgaggagcgtgttccgaatcccgattcgtttccgagtttcgagaatcgaaa
tgggcaaatttcaatgaaaatgaaagtactccacacatcgccggcgctcgtcaactttct
tcccttggaaatgctcgaatccatccaaacttccacgattttacagaatctaaaaccgcc
cacacccaatcgaccgccgtgccgaccgccgtcttactggccatttgtagatcaccatgt
gacaaattggcaggaattccgatttcaggccgagcaggcccgacaggagacggttttgag
gaggcttaaaaaattacgcccaccgtcgcacgccgagctccgccgagagcggattactgt
agaaaatgtggattttcacgtgttttcgccagcctctttctcccatcggctaccagctcg
gccgttgttctcactaatttgttatagcgccaccggaccaccgctgaaaatttcggagct
cgccgagctcgaaaacgtggtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTACCCGAGGAGCGTGTTCCG 202 643 438 Antisense
TCCCGATTCGTTTCCGAGTTTCGAG 489 595 465 Antisense
GTCAACTTTCTTCCCTTGGAAATGC 538 461 547 Antisense
ATCCATCCAAACTTCCACGATTTTA 100 41 576 Antisense
TTACAGAATCTAAAACCGCCCACAC 273 683 598 Antisense
GCCGTCTTACTGGCCATTTGTAGAT 246 283 645 Antisense
TGGCAGGAATTCCGATTTCAGGCCG 309 545 685 Antisense
GAGCAGGCCCGACAGGAGACGGTTT 120 385 709 Antisense
TGGATTTTCACGTGTTTTCGCCAGC 304 551 806 Antisense
GGCCGTTGTTCTCACTAATTTGTTA 512 539 857 Antisense
CTCGCCGAGCTCGAAAACGTGGTCT 549 233 916 Antisense
Sequence Source Affymetrix Proprietary Database