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[186074_at]

Description R03H10.6 /REP_DB=WormBase Gene ID /WP=CE02842 /TR=Q9GYL9 /GB=AAG00002.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 47      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 66.2
(3)
A 		5.5
(-3)
A 		46.5
(1.1)
A 		52.7
(1.7)
A 		61
B 107.3
(3)
A 		31.2
(-1.7)
A 		9.6
(-3)
A 		9.5
(-3)
A 		98
C 57.7
(3)
A 		11.2
(-3)
A 		18.4
(-2.1)
A 		25.3
(-1.2)
A 		47
avr 77.1
(3) 		16
(-3) 		24.8
(-2.1) 		29.2
(-1.7) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 292.7
(3)
P 		162.8
(0.3)
P 		61.8
(-1.9)
A 		26.5
(-2.6)
A 		11.8
(-2.9)
A 		8.9
(-3)
A 		284
B 241.5
(3)
P 		152.5
(0.7)
P 		70.2
(-1.4)
A 		24
(-2.6)
A 		6.5
(-3)
A 		9.4
(-2.9)
A 		235
C 248
(3)
P 		205.3
(1.9)
P 		57.3
(-1.7)
A 		27.6
(-2.4)
A 		40.9
(-2.1)
A 		4.9
(-3)
A 		243
avr 260.7
(3) 		173.5
(0.9) 		63.1
(-1.7) 		26
(-2.6) 		19.7
(-2.7) 		7.7
(-3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 24.1
(3)
A 		1.2
(-3)
A 		12.2
(-0.1)
A 		7.7
(-1.3)
A 		23
B 34.2
(3)
A 		7.7
(-1.9)
A 		2.2
(-3)
A 		2
(-3)
A 		32
C 19.1
(3)
A 		3.2
(-3)
A 		6.4
(-1.8)
A 		4.3
(-2.6)
A 		16
avr 25.8
(3) 		4
(-3) 		6.9
(-2.2) 		4.7
(-2.8) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 54
(2.6)
P 		57.9
(3)
P 		13.4
(-1.8)
A 		6.7
(-2.5)
A 		3.5
(-2.9)
A 		2.2
(-3)
A 		56
B 84
(3)
P 		50.8
(0.6)
P 		17.1
(-1.9)
A 		6.3
(-2.7)
A 		2.6
(-3)
A 		3.5
(-2.9)
A 		81
C 91.9
(3)
P 		62.6
(1.1)
P 		14.6
(-2.1)
A 		5.6
(-2.7)
A 		13.2
(-2.2)
A 		1.6
(-3)
A 		90
avr 76.6
(3) 		57.1
(1.4) 		15
(-2) 		6.2
(-2.7) 		6.4
(-2.7) 		2.4
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5778
Sequence Type Exemplar sequence
Representative Public ID R03H10.6 NCBI
Target Description R03H10.6 /REP_DB=WormBase Gene ID /WP=CE02842 /TR=Q9GYL9 /GB=AAG00002.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062332 NCBI Caenorhabditis elegans R03H10.6 (R03H10.6) mRNA, complete cds. 11/11 None
SNAP00000041943 ENSEMBL cdna:SNAP chromosome:CEL140:II:4171805:4173481:-1 11/11 None
GENEFINDER00000041950 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4171419:4173481:-1 10/11 None
R03H10.6 ENSEMBL cdna:known chromosome:CEL140:II:4171288:4173869:-1 gene:R03H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4171803-4175472(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H10.6
Entrez Gene 187558 Entrez gene
SwissProt Q9GYL9 EMBL-EBI
WormBase CE33430 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG00002 Hypothetical protein R03H10.6 [Caenorhabditis elegans] ref|NP_494733.2| R03H10.6 [Caenorhabditis elegans] 0.0
blast AAG00002 Hypothetical protein R03H10.6 [Caenorhabditis elegans] ref|NP_494733.2| R03H10.6 [Caenorhabditis elegans] 1.0E-162
blast AAG00003 Hypothetical protein R03H10.7 [Caenorhabditis elegans] ref|NP_494734.1| R03H10.7 [Caenorhabditis elegans] 8.0E-58
blast AAG00003 Hypothetical protein R03H10.7 [Caenorhabditis elegans] ref|NP_494734.1| R03H10.7 [Caenorhabditis elegans] 9.0E-58
blast AAB63407 Hypothetical protein F18A1.5 [Caenorhabditis elegans] ref|NP_495606.1| F18A1.5 [Caenorhabditis elegans] sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit (RP-A) (RF-A) (Replication factor-A protein 1) 8.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR004365 EMBL-EBI OB-fold nucleic acid binding domain 1.2E-8
Sequence
Target Sequence 
>C. ELEGANS:186074_AT
acctgcagctgtgactccaattgcaaatctcaacgattcggtcgataatttcaagatcca
tggaagagtaacactcatggatgataaacgccgtccagagaaagtattcagcttcgagat
cacggatgttaatggttacactattcgatgtgttgctttcggtgaattaggcgtcaggct
ctacggaagtattgcgaaggatcagtcgtattacctcaccggcggaaaagttaaaaatgg
acacacactgtacaaccaaactggacatgcatttgaaattatactggatgaattccccac
gattgaacctgctccagccgtgttgacagtcccaaaattgaacctcaatagggtcatgct
ctgcaatgtccaaaatgagcaatactaccgaaagccaattgacgttattgttgctgttga
agaaatcaatgattttctcgatgattaccacccaatagaaaataaacctccagttttgag
aaatatggtggtcattgacgattcgaattttagaattcggcttactctatgggggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTGCAGCTGTGACTCCAATTGCA 692 87 561 Antisense
AACGCCGTCCAGAGAAAGTATTCAG 413 143 647 Antisense
GTATTCAGCTTCGAGATCACGGATG 456 453 664 Antisense
GAATTAGGCGTCAGGCTCTACGGAA 407 321 724 Antisense
TCGTATTACCTCACCGGCGGAAAAG 72 591 766 Antisense
GACACACACTGTACAACCAAACTGG 308 365 800 Antisense
TGGATGAATTCCCCACGATTGAACC 21 551 845 Antisense
CCAGCCGTGTTGACAGTCCCAAAAT 102 273 874 Antisense
TAGGGTCATGCTCTGCAATGTCCAA 389 653 909 Antisense
TTTTCTCGATGATTACCACCCAATA 44 677 993 Antisense
GAATTCGGCTTACTCTATGGGGGTA 557 323 1073 Antisense
Sequence Source Affymetrix Proprietary Database