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[186072_s_at]

Description R08F11.4 /REP_DB=WormBase Gene ID /WP=CE12586 /TR=O01889 /GB=AAB54246.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 253.3
(2.5)
P 		149.9
(-1.7)
P 		117.2
(-3)
P 		264.5
(3)
P 		147
B 278.3
(1.3)
P 		163.2
(-2)
P 		129.5
(-3)
P 		336.9
(3)
P 		207
C 218.1
(-0.8)
P 		132.6
(-2.5)
P 		107.4
(-3)
P 		410
(3)
P 		303
avr 249.9
(0.6) 		148.6
(-2.2) 		118
(-3) 		337.1
(3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 941
1 2 3 4 5 6 range
A 1092.3
(3)
P 		329.9
(-2)
P 		299.5
(-2.2)
P 		229.6
(-2.7)
P 		177.2
(-3)
P 		368.7
(-1.7)
P 		915
B 924.1
(3)
P 		283.7
(-2.5)
P 		279.4
(-2.5)
P 		243.5
(-2.9)
P 		226.2
(-3)
P 		361.2
(-1.8)
P 		698
C 766.8
(3)
P 		294.8
(-1.6)
P 		311.7
(-1.4)
P 		270.1
(-1.8)
P 		151.7
(-3)
P 		424.6
(-0.3)
P 		615
avr 927.7
(3) 		302.8
(-2) 		296.9
(-2.1) 		247.7
(-2.5) 		185
(-3) 		384.8
(-1.4) 		743
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 92.2
(3)
P 		32.5
(-2.8)
P 		30.6
(-3)
P 		38.7
(-2.2)
P 		62
B 88.7
(3)
P 		40.3
(-1.9)
P 		30
(-3)
P 		71.8
(1.3)
P 		59
C 72.2
(3)
P 		38.1
(-2.9)
P 		37.4
(-3)
P 		69.1
(2.5)
P 		35
avr 84.4
(3) 		37
(-2.5) 		32.7
(-3) 		59.9
(0.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 201.4
(3)
P 		117.3
(-0.4)
P 		65.2
(-2.5)
P 		58.2
(-2.8)
P 		53.5
(-3)
P 		89.8
(-1.5)
P 		148
B 321.6
(3)
P 		94.4
(-2.3)
P 		67.8
(-2.9)
P 		64.5
(-3)
P 		91.9
(-2.4)
P 		134.7
(-1.4)
P 		257
C 284.2
(3)
P 		89.9
(-2)
P 		79.3
(-2.2)
P 		54.3
(-2.9)
P 		49.1
(-3)
P 		142.1
(-0.6)
P 		235
avr 269.1
(3) 		100.5
(-1.8) 		70.8
(-2.7) 		59
(-3) 		64.8
(-2.8) 		122.2
(-1.2) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186072_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15930
Sequence Type Exemplar sequence
Representative Public ID R08F11.4 NCBI
Target Description R08F11.4 /REP_DB=WormBase Gene ID /WP=CE12586 /TR=O01889 /GB=AAB54246.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071651 NCBI Caenorhabditis elegans R08F11.4 (R08F11.4) mRNA, complete cds. 11/11 None
SNAP00000031722 ENSEMBL cdna:SNAP chromosome:CEL140:V:3803793:3805318:-1 11/11 None
GENEFINDER00000031726 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3803793:3805692:-1 11/11 None
R08F11.4 ENSEMBL cdna:known chromosome:CEL140:V:3803671:3805341:-1 gene:R08F11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3803792-3805318(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08F11.4
Entrez Gene 178797 Entrez gene
SwissProt O01889 EMBL-EBI
WormBase CE12586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54246 Hypothetical protein R08F11.4 [Caenorhabditis elegans] ref|NP_504052.1| R08F11.4 [Caenorhabditis elegans] 0.0
blast CAE62457 Hypothetical protein CBG06551 [Caenorhabditis briggsae] 1.0E-162
blast AAG24159 Hypothetical protein K12D9.1 [Caenorhabditis elegans] ref|NP_503823.1| K12D9.1 [Caenorhabditis elegans] 1.0E-155
blast AAG24159 Hypothetical protein K12D9.1 [Caenorhabditis elegans] ref|NP_503823.1| K12D9.1 [Caenorhabditis elegans] 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:186072_S_AT
cattccggatttggttccagccattggaaacgggatcaaggagaagctggaagctggtgg
gatccgagtgttggatgtcgggtgtgggggtggattccattcgggcttgctcgcggagca
ctatccgaaatctcagtttgttggattagatatcaccgagaaagctatcaaagcagcgag
gctcaagaagaaatctgatggcactgattttgaaaacttggaatttgtagtagctgacgc
tgcaataatgccaagttcatggaccgactcattcgatttagtcatcctgtttgggtcttg
ccacgatcaaatgagacctgacttgtgccttctcgaagttcaccgtgtggtgaagccaga
tggtttagtcgcggtcaccgacgttgatggatctagcaatgtgttcaccgatcgtgagac
ctacgggaagatggctgcgatgaagtatggtggatcgatgcttcattgtcttccggttgg
gagcaataggccagatgcactatgttgcggctcaatgtggggaaggaagagagcagttga
gataatgaataagtgtggttttgataatatcgacattattccgactgactacttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCCGGATTTGGTTCCAGCCATT 360 217 450 Antisense
GAAGCTGGTGGGATCCGAGTGTTGG 604 343 499 Antisense
ATGCCAAGTTCATGGACCGACTCAT 140 41 697 Antisense
TTAGTCATCCTGTTTGGGTCTTGCC 314 681 727 Antisense
AAATGAGACCTGACTTGTGCCTTCT 641 119 758 Antisense
GAAGCCAGATGGTTTAGTCGCGGTC 601 343 801 Antisense
AGTCGCGGTCACCGACGTTGATGGA 416 59 816 Antisense
GTGTTCACCGATCGTGAGACCTACG 616 483 850 Antisense
GTGGATCGATGCTTCATTGTCTTCC 188 489 899 Antisense
GGCCAGATGCACTATGTTGCGGCTC 550 539 938 Antisense
GACATTATTCCGACTGACTACTTCC 138 371 1021 Antisense
Sequence Source Affymetrix Proprietary Database