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[186071_at]

Description F45D11.9 /REP_DB=WormBase Gene ID /WP=CE23741 /TR=Q9N5T9 /GB=AAF39820.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 29.3
(-3)
A 		39.8
(-1.8)
A 		31.3
(-2.8)
A 		82.5
(3)
A 		53
B 6.6
(-3)
A 		53.5
(3)
A 		43.1
(1.7)
A 		15.1
(-1.9)
A 		47
C 42.9
(-2)
A 		55.8
(-0.4)
P 		34.9
(-3)
A 		83.2
(3)
P 		48
avr 26.3
(-3) 		49.7
(1.1) 		36.4
(-1.2) 		60.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 108.4
(3)
A 		4.8
(-3)
A 		27.8
(-1.7)
A 		5.5
(-3)
A 		31.8
(-1.4)
A 		67.1
(0.6)
A 		104
B 25.8
(-3)
A 		36.3
(-1.1)
A 		27.4
(-2.7)
A 		34.9
(-1.3)
A 		51.4
(1.7)
P 		58.4
(3)
P 		33
C 35.6
(-0.4)
A 		18.7
(-3)
A 		35.6
(-0.4)
A 		57.1
(3)
A 		23.3
(-2.3)
P 		35.9
(-0.3)
A 		38
avr 56.6
(3) 		19.9
(-3) 		30.3
(-1.3) 		32.5
(-0.9) 		35.5
(-0.4) 		53.8
(2.5) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.7
(0.8)
A 		8.6
(-2.4)
A 		8.2
(-3)
A 		12.1
(3)
A 		4
B 2.1
(-3)
A 		13.2
(3)
A 		10
(1.3)
A 		3.2
(-2.4)
A 		11
C 14.2
(0.2)
A 		16
(3)
P 		12.2
(-3)
A 		14
(-0.2)
P 		4
avr 9
(-3) 		12.6
(3) 		10.1
(-1.2) 		9.8
(-1.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 20
(3)
A 		1.7
(-2.9)
A 		6.1
(-1.5)
A 		1.4
(-3)
A 		9.6
(-0.4)
A 		16.3
(1.8)
A 		19
B 9
(-2.1)
A 		12.1
(-0.8)
A 		6.6
(-3)
A 		9.3
(-1.9)
A 		20.9
(2.6)
P 		21.8
(3)
P 		15
C 13.2
(3)
A 		5.7
(-3)
A 		9.1
(-0.3)
A 		11.5
(1.6)
A 		7.5
(-1.6)
P 		12
(2)
A 		8
avr 14.1
(1.5) 		6.5
(-3) 		7.3
(-2.5) 		7.4
(-2.5) 		12.7
(0.6) 		16.7
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5812
Sequence Type Exemplar sequence
Representative Public ID F45D11.9 NCBI
Target Description F45D11.9 /REP_DB=WormBase Gene ID /WP=CE23741 /TR=Q9N5T9 /GB=AAF39820.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061476 NCBI Caenorhabditis elegans F45D11.9 (F45D11.9) mRNA, complete cds. 11/11 None
SNAP00000019551 ENSEMBL cdna:SNAP chromosome:CEL140:II:991706:994195:1 11/11 None
GENEFINDER00000019578 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:991706:993428:1 11/11 None
F45D11.9 ENSEMBL cdna:known chromosome:CEL140:II:991706:992628:1 gene:F45D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:991704-992627(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45D11.9
Entrez Gene 185785 Entrez gene
SwissProt Q9N5T9 EMBL-EBI
WormBase CE23741 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39820 Hypothetical protein F45D11.9 [Caenorhabditis elegans] ref|NP_493877.1| F45D11.9 [Caenorhabditis elegans] 1.0E-157
blast AAF39823 Hypothetical protein F45D11.8 [Caenorhabditis elegans] ref|NP_493878.1| F45D11.8 [Caenorhabditis elegans] 1.0E-131
blast AAF39825 Hypothetical protein F45D11.12 [Caenorhabditis elegans] ref|NP_493880.1| F45D11.12 [Caenorhabditis elegans] 1.0E-79
blast AAF39824 Hypothetical protein F45D11.10 [Caenorhabditis elegans] ref|NP_493876.1| F45D11.10 [Caenorhabditis elegans] 6.0E-10
blast AAF39824 Hypothetical protein F45D11.10 [Caenorhabditis elegans] ref|NP_493876.1| F45D11.10 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186071_AT
agcactaccaatcacattcagctctggattaatgggaacctctacgcaaaaaccgtcagc
gaaccgcagaacaataaagagctggcttacctggtctgtaagcttctgcgtcaagcctgg
gaagcggttttgtatgttgggacgctggtttatggaaatttaattttccccggtttccca
aagtttttcaagtttcacgttcaacatttggtcatcggaaaagatcaagacgcgtccgat
gttctgcggagattcggtgaaaacttccaaaattcaagcttcaagtctttggagctattt
cgtaccagtagtttcgaggtcccactgatccagtcagcggagaagctgattatcaacgag
cgtatggacttgagtgcgctcaagagtcggagagttcacgtggaatttaagatcgactca
aagttcctcacagatcttattgattgctggttgtggaatggagctgtggggaagaccgag
aaggaagctggatcagtgttcatttttgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACTACCAATCACATTCAGCTCT 284 77 247 Antisense
GAACCTCTACGCAAAAACCGTCAGC 24 347 282 Antisense
TAAAGAGCTGGCTTACCTGGTCTGT 245 641 321 Antisense
GGTCTGTAAGCTTCTGCGTCAAGCC 699 501 339 Antisense
CTGCGTCAAGCCTGGGAAGCGGTTT 710 141 352 Antisense
GTTTCACGTTCAACATTTGGTCATC 671 449 438 Antisense
GATCAAGACGCGTCCGATGTTCTGC 612 421 469 Antisense
GGAGCTATTTCGTACCAGTAGTTTC 638 517 537 Antisense
CAGTAGTTTCGAGGTCCCACTGATC 558 205 552 Antisense
TCGACTCAAAGTTCCTCACAGATCT 654 599 659 Antisense
GCTGGATCAGTGTTCATTTTTGCGA 461 295 733 Antisense
Sequence Source Affymetrix Proprietary Database