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[186070_at]

Description Y71H2B.7 /REP_DB=WormBase Gene ID /WP=CE24633 /TR=Q9N4F4 /GB=AAF36036.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 51      6grp_total > 43      4grp_total > 54      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 716.1
(3)
P 		523.1
(-0.5)
P 		447.5
(-1.8)
P 		383.2
(-3)
P 		333
B 779.6
(3)
P 		531.7
(-1.4)
P 		541.9
(-1.2)
P 		441.9
(-3)
P 		338
C 709.3
(3)
P 		464.3
(-2.2)
P 		592.3
(0.5)
P 		425.3
(-3)
P 		284
avr 735
(3) 		506.4
(-1.3) 		527.2
(-0.9) 		416.8
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 539
(-0.5)
P 		614.5
(1.4)
P 		681.8
(3)
P 		567.2
(0.2)
P 		444
(-2.8)
P 		435.8
(-3)
P 		246
B 700.9
(-0.1)
P 		642.6
(-1)
P 		912.5
(3)
P 		542.5
(-2.5)
P 		506.5
(-3)
P 		506.7
(-3)
P 		406
C 612.3
(3)
P 		565.8
(1.8)
P 		605.7
(2.8)
P 		537.3
(1)
P 		387.1
(-3)
P 		564.1
(1.7)
P 		225
avr 617.4
(0.6) 		607.6
(0.4) 		733.3
(3) 		549
(-0.8) 		445.9
(-3) 		502.2
(-1.8) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 260.7
(3)
P 		113.6
(-1.3)
P 		117
(-1.2)
P 		56.1
(-3)
P 		205
B 248.6
(3)
P 		131.3
(-1.6)
P 		125.6
(-1.8)
P 		94.2
(-3)
P 		154
C 234.8
(3)
P 		133.5
(-0.7)
P 		206.4
(2)
P 		71.7
(-3)
P 		163
avr 248
(3) 		126.1
(-1.2) 		149.7
(-0.4) 		74
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 99.4
(-3)
P 		218.6
(3)
P 		148.5
(-0.5)
P 		143.9
(-0.8)
P 		134
(-1.3)
P 		106.1
(-2.7)
P 		119
B 243.9
(3)
P 		213.9
(1.2)
P 		221.6
(1.7)
P 		143.7
(-3)
P 		205.8
(0.7)
P 		188.9
(-0.3)
P 		100
C 227
(3)
P 		172.6
(0.3)
P 		154.2
(-0.7)
P 		108.1
(-3)
P 		125.3
(-2.1)
P 		188.8
(1.1)
P 		119
avr 190.1
(2) 		201.7
(3) 		174.8
(0.7) 		131.9
(-3) 		155
(-1) 		161.3
(-0.5) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6318
Sequence Type Exemplar sequence
Representative Public ID Y71H2B.7 NCBI
Target Description Y71H2B.7 /REP_DB=WormBase Gene ID /WP=CE24633 /TR=Q9N4F4 /GB=AAF36036.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065184 NCBI Caenorhabditis elegans Y71H2B.7 (Y71H2B.7) mRNA, complete cds. 11/11 None
SNAP00000014008 ENSEMBL cdna:SNAP chromosome:CEL140:III:2586580:2603120:1 11/11 None
GENEFINDER00000014048 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2586580:2589371:1 11/11 None
Y71H2B.7.1 ENSEMBL cdna:known chromosome:CEL140:III:2586474:2589301:1 gene:Y71H2B.7 11/11 None
Y71H2B.7.2 ENSEMBL cdna:known chromosome:CEL140:III:2586544:2589301:1 gene:Y71H2B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2586579-2589230(+) 99.26 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2B.7
Entrez Gene 175377 Entrez gene
SwissProt Q9N4F4 EMBL-EBI
WormBase CE24633 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36036 Hypothetical protein Y71H2B.7 [Caenorhabditis elegans] ref|NP_497585.1| Y71H2B.7 [Caenorhabditis elegans] 0.0
blast CAE64988 Hypothetical protein CBG09823 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186070_AT
gatgatattgtccacgttcgtaagccaacagtttcattcaaaagctacaaattccgaatc
aagcagcttcgcgttgaaattcacgatatgggaggacaaaagagcgaattagtaaaaatc
ccacaattcatgcggcaatttctaactactgatggacattgctttttgctctacgtttcc
tcgttggccgcattccaggagcctgataaggatgtgaaagggcgaacggtgttggacaag
agtgcagcgattttcaagctagttctcgaaatgaacggagtcgacgagtgtacggtaatg
atattcttcaataaacaggatcgattcgaggagatttgccgagaaatgatgcagaaagaa
gatgggaagcggcagctcgagaaggtgctcggaattcctccaaaagttcaaaaagaggga
aaaaagggaaaaccggagaattatgatcatttgaaggatgcgattcgaagtcgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATATTGTCCACGTTCGTAAGC 641 409 610 Antisense
AATTCCGAATCAAGCAGCTTCGCGT 588 177 659 Antisense
GCAGCTTCGCGTTGAAATTCACGAT 706 313 672 Antisense
AAAATCCCACAATTCATGCGGCAAT 228 133 724 Antisense
CATGCGGCAATTTCTAACTACTGAT 463 209 738 Antisense
GACATTGCTTTTTGCTCTACGTTTC 449 371 764 Antisense
TGGCCGCATTCCAGGAGCCTGATAA 471 543 794 Antisense
GAGTGCAGCGATTTTCAAGCTAGTT 161 401 849 Antisense
GAAGCGGCAGCTCGAGAAGGTGCTC 617 343 975 Antisense
GAGAAGGTGCTCGGAATTCCTCCAA 584 391 988 Antisense
GAAGGATGCGATTCGAAGTCGTTTC 288 333 1062 Antisense
Sequence Source Affymetrix Proprietary Database