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[186069_at]

Description Y62E10A.4 /REP_DB=WormBase Gene ID /WP=CE24541 /TR=Q9U1X1 /GB=CAB60603.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 14      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 61.4
(1.7)
A 		7.8
(-2.8)
A 		5.6
(-3)
A 		77.5
(3)
A 		72
B 6.8
(-3)
A 		14
(3)
A 		12.4
(1.7)
A 		10.2
(-0.2)
A 		7
C 25.1
(0.8)
A 		9.2
(-3)
A 		10
(-2.8)
A 		34.5
(3)
A 		25
avr 31.1
(1.2) 		10.3
(-2.8) 		9.3
(-3) 		40.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 5.3
(-3)
A 		10.5
(-2.5)
A 		80.3
(3)
A 		41.2
(-0.1)
A 		4.8
(-3)
A 		15
(-2.2)
A 		76
B 29.9
(0.6)
A 		13.3
(-3)
A 		13.5
(-3)
A 		24.3
(-0.6)
A 		41.1
(3)
A 		30.8
(0.8)
A 		28
C 28.4
(-0.8)
A 		4.2
(-3)
A 		71.3
(3)
A 		25.3
(-1.1)
A 		31.1
(-0.6)
A 		30.6
(-0.6)
A 		67
avr 21.2
(-1.4) 		9.3
(-3) 		55
(3) 		30.3
(-0.2) 		25.7
(-0.8) 		25.5
(-0.9) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.3
(3)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		11.3
(-0.2)
A 		21
B 2.2
(-3)
A 		3.5
(3)
A 		2.9
(0.2)
A 		2.2
(-3)
A 		1
C 8.3
(3)
A 		2.6
(-3)
A 		3.5
(-2.1)
A 		5.8
(0.4)
A 		6
avr 10.9
(3) 		2.6
(-3) 		2.6
(-3) 		6.4
(-0.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1
(-3)
A 		3.7
(-2)
A 		17.5
(3)
A 		10.5
(0.5)
A 		1.5
(-2.8)
A 		3.7
(-2)
A 		17
B 10.4
(0.2)
A 		4.4
(-2.5)
A 		3.3
(-3)
A 		6.4
(-1.6)
A 		16.7
(3)
A 		11.5
(0.7)
A 		13
C 10.5
(0.3)
A 		1.3
(-3)
A 		18.2
(3)
A 		5.1
(-1.7)
A 		10.1
(0.1)
A 		10.3
(0.2)
A 		17
avr 7.3
(-0.5) 		3.1
(-3) 		13
(3) 		7.3
(-0.5) 		9.4
(0.8) 		8.5
(0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9086
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.4 NCBI
Target Description Y62E10A.4 /REP_DB=WormBase Gene ID /WP=CE24541 /TR=Q9U1X1 /GB=CAB60603.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070168 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-25) (srsx-25) mRNA, complete cds. 11/11 None
GENEFINDER00000008099 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13365138:13368350:1 10/11 None
Y62E10A.4 ENSEMBL cdna:known chromosome:CEL140:IV:13365138:13368350:1 gene:Y62E10A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13365143-13368356(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srsx-25
Ensembl Y62E10A.4
Entrez Gene 190453 Entrez gene
SwissProt Q9U1X1 EMBL-EBI
WormBase CE24541 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60603 Hypothetical protein Y62E10A.4 [Caenorhabditis elegans] ref|NP_502569.1| Serpentine Receptor, class SX family member (srsx-25) [Caenorhabditis elegans] 1.0E-172
blast CAB60603 Hypothetical protein Y62E10A.4 [Caenorhabditis elegans] ref|NP_502569.1| Serpentine Receptor, class SX family member (srsx-25) [Caenorhabditis elegans] 1.0E-166
blast AAA83471 Serpentine receptor, class sx protein 22 [Caenorhabditis elegans] ref|NP_505153.2| Serpentine Receptor, class SX family member (srsx-22) [Caenorhabditis elegans] 6.0E-63
blast CAE58619 Hypothetical protein CBG01786 [Caenorhabditis briggsae] 1.0E-60
blast AAA83471 Serpentine receptor, class sx protein 22 [Caenorhabditis elegans] ref|NP_505153.2| Serpentine Receptor, class SX family member (srsx-22) [Caenorhabditis elegans] 3.0E-57
blast CAE58619 Hypothetical protein CBG01786 [Caenorhabditis briggsae] 5.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502569.1 7 10-32,45-67,82-104,125-147,167-189,210-232,252-269
Y62E10A.4 7 10-32,45-67,82-104,125-147,167-189,210-232,252-269
GENEFINDER00000008099 7 10-32,45-67,82-104,162-184,204-226,247-269,289-306
Sequence
Target Sequence 
>C. ELEGANS:186069_AT
ctttataatgtcacctaccctttgcgatattcccaacttccaaactcattttacattgcc
cttttccttttttgcgtgggattttccgttcttatcacttattccggatattcttatgct
tcggattcagaaatagttctagtatgcttaccaccaacagcttataccgataaatctaga
attatatggattggttcgaattttattattgcaattttagtcatttttgtgtatggtggt
gcacaaattcgttgtcggattttgagagcccgtcacgtgcacgaacaatctatggatgca
gtgaatcgactgcttaaatcgttgagcattgttgtaacaatatatgtctgcacgtggttt
ctcacgatcagttcacttgttgtttctcagttgattaccttttcaccgcctgtcaccgca
gaaattaatcgacaacttggctggctggtgattatcaatgcttcactcaatttctttgtt
tatctttggagaaattcagaatatcgaaaagcattcatccgactttatggactttctcga
ctcttcagcgttgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTATAATGTCACCTACCCTTTGC 432 217 331 Antisense
TTGCGATATTCCCAACTTCCAAACT 70 695 352 Antisense
CAAACTCATTTTACATTGCCCTTTT 682 191 371 Antisense
TTTTCCGTTCTTATCACTTATTCCG 625 675 412 Antisense
TTACCACCAACAGCTTATACCGATA 86 677 478 Antisense
CGGATTTTGAGAGCCCGTCACGTGC 392 243 586 Antisense
GTCTGCACGTGGTTTCTCACGATCA 615 471 676 Antisense
GATCAGTTCACTTGTTGTTTCTCAG 454 421 696 Antisense
TCTCAGTTGATTACCTTTTCACCGC 360 613 715 Antisense
ATCGACAACTTGGCTGGCTGGTGAT 406 37 758 Antisense
CTTTCTCGACTCTTCAGCGTTGAAA 653 221 862 Antisense
Sequence Source Affymetrix Proprietary Database