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[186068_at]

Description F49H12.2 /REP_DB=WormBase Gene ID /WP=CE20838 /TR=Q9N5S4 /GB=AAF39828.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 50.9
(3)
A 		12.6
(-2.2)
A 		7.1
(-3)
A 		26.7
(-0.3)
A 		44
B 54.3
(3)
A 		14.8
(-2.3)
A 		10
(-3)
A 		18.5
(-1.8)
A 		44
C 15.2
(-2.3)
A 		54.9
(-0.2)
A 		3.2
(-3)
A 		112.2
(3)
A 		109
avr 40.1
(1.4) 		27.4
(-0.3) 		6.8
(-3) 		52.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 86.8
(3)
A 		11.2
(-3)
A 		48.7
(-0)
A 		56.9
(0.6)
A 		53.6
(0.4)
A 		14.2
(-2.8)
A 		76
B 89.4
(3)
A 		87.4
(2.9)
A 		12.5
(-2.5)
A 		56
(0.6)
A 		20.7
(-1.9)
A 		6
(-3)
A 		83
C 66.2
(0.8)
A 		101.1
(3)
A 		13.8
(-2.6)
A 		29.4
(-1.6)
A 		7.8
(-3)
A 		8.7
(-2.9)
A 		93
avr 80.8
(3) 		66.6
(1.8) 		25
(-1.7) 		47.4
(0.2) 		27.4
(-1.5) 		9.6
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.5
(3)
A 		2.7
(-2.7)
A 		1.9
(-3)
A 		3.9
(-2.3)
A 		17
B 17.3
(3)
A 		3.6
(-2.5)
A 		2.3
(-3)
A 		3.9
(-2.4)
A 		15
C 5
(-1.7)
A 		15.8
(2)
A 		1.1
(-3)
A 		18.9
(3)
A 		18
avr 13.6
(3) 		7.4
(-0.2) 		1.8
(-3) 		8.9
(0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 16
(2.9)
A 		4
(-2.8)
A 		10.6
(0.4)
A 		14.4
(2.1)
A 		16.2
(3)
A 		3.5
(-3)
A 		13
B 31.1
(3)
A 		29.1
(2.6)
A 		3
(-2.8)
A 		14.8
(-0.4)
A 		8.4
(-1.7)
A 		2.2
(-3)
A 		29
C 24.5
(1.6)
A 		30.9
(3)
A 		3.5
(-2.8)
A 		5.9
(-2.3)
A 		2.5
(-3)
A 		2.9
(-2.9)
A 		28
avr 23.9
(3) 		21.3
(2.3) 		5.7
(-2.2) 		11.7
(-0.5) 		9
(-1.3) 		2.9
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18358
Sequence Type Exemplar sequence
Representative Public ID F49H12.2 NCBI
Target Description F49H12.2 /REP_DB=WormBase Gene ID /WP=CE20838 /TR=Q9N5S4 /GB=AAF39828.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075983 NCBI Caenorhabditis elegans F49H12.2 (F49H12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000015661 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2085282:2086724:1 10/11 None
F49H12.2 ENSEMBL cdna:known chromosome:CEL140:X:2086051:2086724:1 gene:F49H12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015652 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2086050-2086724(+) 94.41 100.0
Public Domain and Genome References
Gene Title
Ensembl F49H12.2
Entrez Gene 186081 Entrez gene
SwissProt Q9N5S4 EMBL-EBI
WormBase CE20838 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39828 Hypothetical protein F49H12.2 [Caenorhabditis elegans] ref|NP_508384.1| F49H12.2 [Caenorhabditis elegans] 1.0E-70
blast AAF39828 Hypothetical protein F49H12.2 [Caenorhabditis elegans] ref|NP_508384.1| F49H12.2 [Caenorhabditis elegans] 1.0E-58
blast CAE68357 Hypothetical protein CBG14095 [Caenorhabditis briggsae] 3.0E-31
blast CAE68357 Hypothetical protein CBG14095 [Caenorhabditis briggsae] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:186068_AT
aaattgctctttatctatatgtggtagacgccgagccaacaaaaaaaccgaaagtcgttt
ggcctggagaatttgaaaaccaattaaggaagcgaaaccgaaatctggagaaaattgatg
aaagagagaataatagacttgaaacaccagcaatacatactccttcggacactcaaagcc
tgatttctaatgaagaggatgcacactcaacttctgatttgaaaccagagacaccgccag
atgacaaagtacataaagtggaaaagaaagagccacctccaaagaaatcatcaaacatta
ctcccatatccattagtgacactcattttatggatgagtttctagagccgcctaaaaagt
tgaatccgacttcttcagggggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCTCTTTATCTATATGTGGT 608 115 56 Antisense
GAAAGTCGTTTGGCCTGGAGAATTT 215 359 105 Antisense
AACACCAGCAATACATACTCCTTCG 220 137 198 Antisense
TCCTTCGGACACTCAAAGCCTGATT 53 585 216 Antisense
GGATGCACACTCAACTTCTGATTTG 198 513 252 Antisense
GAGACACCGCCAGATGACAAAGTAC 313 393 283 Antisense
GGAAAAGAAAGAGCCACCTCCAAAG 448 525 315 Antisense
ATCATCAAACATTACTCCCATATCC 98 31 342 Antisense
CTCCCATATCCATTAGTGACACTCA 690 233 356 Antisense
ATGGATGAGTTTCTAGAGCCGCCTA 91 53 385 Antisense
TGAATCCGACTTCTTCAGGGGGTTC 260 571 416 Antisense
Sequence Source Affymetrix Proprietary Database