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[186067_s_at]

Description C32D5.11 /REP_DB=WormBase Gene ID /WP=CE02527 /TR=Q18355 /GB=AAC46800.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 76      6grp_total > 49      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1035
1 2 3 4 range
A 1671.2
(1.7)
P 		1135.8
(-3)
P 		1145.4
(-2.9)
P 		1825.5
(3)
P 		690
B 1597.2
(1.3)
P 		1112.7
(-1.8)
P 		919.8
(-3)
P 		1858.5
(3)
P 		939
C 1681.2
(2.4)
P 		968.5
(-2.1)
P 		823.9
(-3)
P 		1779.3
(3)
P 		955
avr 1649.9
(1.8) 		1072.3
(-2.2) 		963
(-3) 		1821.1
(3) 		858

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 650
1 2 3 4 5 6 range
A 1384.9
(3)
P 		1212.5
(0.8)
P 		904.8
(-3)
P 		1119.1
(-0.3)
P 		1179.9
(0.4)
P 		1313
(2.1)
P 		480
B 1186.2
(3)
P 		1188.7
(3)
P 		797.1
(-3)
P 		1150.2
(2.4)
P 		1061.6
(1.1)
P 		1057.2
(1)
P 		392
C 1127.9
(-0.1)
P 		825.7
(-3)
P 		1447.2
(3)
P 		1189.7
(0.5)
P 		1137.2
(0)
P 		1141.8
(0.1)
P 		622
avr 1233
(3) 		1075.6
(-2.2) 		1049.7
(-3) 		1153
(0.4) 		1126.2
(-0.5) 		1170.7
(1) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 608.5
(3)
P 		246.5
(-3)
P 		299.4
(-2.1)
P 		267.2
(-2.7)
P 		362
B 509.3
(3)
P 		274.8
(-1.8)
P 		213.1
(-3)
P 		396.1
(0.7)
P 		296
C 556.5
(3)
P 		278.4
(-3)
P 		287.1
(-2.8)
P 		300
(-2.5)
P 		278
avr 558.1
(3) 		266.6
(-3) 		266.5
(-3) 		321.1
(-1.9) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 255.3
(-1.5)
P 		431.2
(3)
P 		197
(-3)
P 		283.8
(-0.8)
P 		356.1
(1.1)
P 		319.7
(0.1)
P 		234
B 412.7
(2.5)
P 		395.7
(2.1)
P 		193.6
(-3)
P 		304.6
(-0.2)
P 		431.3
(3)
P 		394.2
(2.1)
P 		238
C 418.1
(3)
P 		252
(-2.6)
P 		368.3
(1.3)
P 		239.2
(-3)
P 		368
(1.3)
P 		382.2
(1.8)
P 		179
avr 362
(2) 		359.6
(1.8) 		253
(-3) 		275.9
(-2) 		385.1
(3) 		365.4
(2.1) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186067_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5825
Sequence Type Exemplar sequence
Representative Public ID C32D5.11 NCBI
Target Description C32D5.11 /REP_DB=WormBase Gene ID /WP=CE02527 /TR=Q18355 /GB=AAC46800.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062878(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062878 NCBI Caenorhabditis elegans C32D5.11 (C32D5.11) mRNA, complete cds. 11/11 None
SNAP00000026834 ENSEMBL cdna:SNAP chromosome:CEL140:II:6352709:6355386:-1 11/11 None
GENEFINDER00000026846 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6349437:6355386:-1 11/11 None
C32D5.11 ENSEMBL cdna:known chromosome:CEL140:II:6352489:6355858:-1 gene:C32D5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6352705-6355855(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32D5.11
Entrez Gene 174052 Entrez gene
SwissProt Q18355 EMBL-EBI
WormBase CE02527 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46800 Hypothetical protein C32D5.11 [Caenorhabditis elegans] ref|NP_495279.1| C32D5.11 [Caenorhabditis elegans] 0.0
blast T15741 hypothetical protein C32D5.10 - Caenorhabditis elegans 0.0
blast AAC46798 Hypothetical protein C32D5.10 [Caenorhabditis elegans] ref|NP_495278.2| C32D5.10 [Caenorhabditis elegans] sp|Q09268|YQDA_CAEEL Hypothetical RING finger protein C32D5.10 in chromosome II 0.0
blast CAE59300 Hypothetical protein CBG02635 [Caenorhabditis briggsae] 1.0E-144
blast CAE59300 Hypothetical protein CBG02635 [Caenorhabditis briggsae] 1.0E-137
blast AAC46798 Hypothetical protein C32D5.10 [Caenorhabditis elegans] ref|NP_495278.2| C32D5.10 [Caenorhabditis elegans] sp|Q09268|YQDA_CAEEL Hypothetical RING finger protein C32D5.10 in chromosome II 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.1E-7
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.1E-7
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.0E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026846 1 1146-1163
Sequence
Target Sequence 
>C. ELEGANS:186067_S_AT
cgatcacgagggctttcgagtctcttccgtcaccctgcatcgtcggattatacaagtcga
cgattcacttctgatggttattctggattggttatgctctcgccacggttaaattcaacc
actacatcatctacgagtatacctgtttatcagccgcgaactatgacgagtaatgatttc
gcgcatttaaaccgaaccagaagcattttggagagaagacatttcccacagccaccacgg
gagcaaagaatcgaagaagtggaacaacttttcaacagagcttaccaaaatatgcagcaa
actcatcaagcaattcaagaacatgctagcacaagcaatgcaccgacacaaattcctcgt
ccagcaactccagcacccgctatatctgacgaagaatctcgatcacttgcggaaattgtt
gcaaccataaatcaggaggatgctgataatggacttgactttatttcggttgctcatcga
acaagatccgcaagaagagcagccgaaaacgggcatccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCACGAGGGCTTTCGAGTCTCT 62 247 1753 Antisense
TCACCCTGCATCGTCGGATTATACA 644 625 1782 Antisense
AGTCGACGATTCACTTCTGATGGTT 374 61 1807 Antisense
ATTCTGGATTGGTTATGCTCTCGCC 128 11 1832 Antisense
TGCTCTCGCCACGGTTAAATTCAAC 359 579 1847 Antisense
AAATTCAACCACTACATCATCTACG 577 115 1863 Antisense
GTATACCTGTTTATCAGCCGCGAAC 556 451 1889 Antisense
GGAGAGAAGACATTTCCCACAGCCA 326 519 1962 Antisense
AATGCACCGACACAAATTCCTCGTC 124 165 2089 Antisense
CAGCACCCGCTATATCTGACGAAGA 67 205 2123 Antisense
GAGCAGCCGAAAACGGGCATCCACC 243 389 2249 Antisense
Sequence Source Affymetrix Proprietary Database