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[186066_at]

Description W01A11.7 /REP_DB=WormBase Gene ID /WP=CE14402 /TR=Q23070 /GB=AAB04972.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 50      6grp_total > 38      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2634
1 2 3 4 range
A 2654.1
(2.9)
P 		236.6
(-2.7)
P 		112.9
(-3)
P 		2693
(3)
P 		2580
B 2464.9
(2.7)
P 		161.8
(-2.8)
P 		86.1
(-3)
P 		2568.4
(3)
P 		2482
C 2706.4
(3)
P 		287.5
(-2.7)
P 		146.1
(-3)
P 		2720.3
(3)
P 		2574
avr 2608.5
(2.9) 		228.6
(-2.7) 		115
(-3) 		2660.6
(3) 		2546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 845
1 2 3 4 5 6 range
A 850.3
(3)
P 		309.9
(-2)
P 		241.5
(-2.7)
P 		206.6
(-3)
P 		233.7
(-2.7)
P 		600.6
(0.7)
P 		644
B 1009.3
(3)
P 		396
(-1.4)
P 		197.1
(-2.8)
P 		164
(-3)
P 		310.7
(-2)
P 		684.6
(0.7)
P 		845
C 839.1
(3)
P 		420.5
(-0.9)
P 		253.2
(-2.5)
P 		194.1
(-3)
P 		247.1
(-2.5)
P 		812.4
(2.8)
P 		645
avr 899.6
(3) 		375.5
(-1.4) 		230.6
(-2.6) 		188.2
(-3) 		263.8
(-2.4) 		699.2
(1.3) 		711
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 946
1 2 3 4 range
A 966.3
(3)
P 		51.4
(-2.9)
P 		29.5
(-3)
P 		394.2
(-0.7)
P 		937
B 786
(3)
P 		40
(-2.8)
P 		19.9
(-3)
P 		547.3
(1.1)
P 		766
C 895.9
(3)
P 		82.7
(-2.8)
P 		50.9
(-3)
P 		458.7
(-0.1)
P 		845
avr 882.7
(3) 		58
(-2.8) 		33.4
(-3) 		466.7
(0.1) 		849

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 156.7
(3)
P 		110.2
(0.3)
P 		52.6
(-3)
P 		52.4
(-3)
P 		70.5
(-2)
P 		146.2
(2.4)
P 		104
B 351.2
(3)
P 		131.8
(-1.3)
P 		47.9
(-2.9)
P 		43.5
(-3)
P 		126.2
(-1.4)
P 		255.3
(1.1)
P 		308
C 311
(3)
P 		128.3
(-1)
P 		64.4
(-2.4)
P 		39
(-3)
P 		80
(-2.1)
P 		272
(2.1)
P 		272
avr 273
(3) 		123.4
(-0.9) 		55
(-2.7) 		45
(-3) 		92.2
(-1.8) 		224.5
(1.7) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12127
Sequence Type Exemplar sequence
Representative Public ID W01A11.7 NCBI
Target Description W01A11.7 /REP_DB=WormBase Gene ID /WP=CE14402 /TR=Q23070 /GB=AAB04972.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072251 NCBI Caenorhabditis elegans W01A11.7 (W01A11.7) mRNA, complete cds. 11/11 None
SNAP00000000917 ENSEMBL cdna:SNAP chromosome:CEL140:V:6507267:6507946:-1 9/11 None
GENEFINDER00000000919 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6505035:6507970:-1 10/11 None
W01A11.7.1 ENSEMBL cdna:known chromosome:CEL140:V:6507132:6508094:-1 gene:W01A11.7 11/11 None
W01A11.7.2 ENSEMBL cdna:known chromosome:CEL140:V:6507267:6507973:-1 gene:W01A11.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6507266-6508117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01A11.7
Entrez Gene 189079 Entrez gene
SwissProt Q23070 EMBL-EBI
WormBase CE37796 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04972 Hypothetical protein W01A11.7 [Caenorhabditis elegans] ref|NP_504652.2| W01A11.7 [Caenorhabditis elegans] 9.0E-99
blast AAB04972 Hypothetical protein W01A11.7 [Caenorhabditis elegans] ref|NP_504652.2| W01A11.7 [Caenorhabditis elegans] 9.0E-97
blast AAB04972 Hypothetical protein W01A11.7 [Caenorhabditis elegans] ref|NP_504652.2| W01A11.7 [Caenorhabditis elegans] 4.0E-94
blast AAB04971 Molybdenum cofactor biosynthesis protein 2 [Caenorhabditis elegans] ref|NP_504651.1| MOlybdenum Cofactor biosynthesis family member (moc-2) [Caenorhabditis elegans] 5.0E-86
blast CAE71894 Hypothetical protein CBG18952 [Caenorhabditis briggsae] 8.0E-79
blast CAE71894 Hypothetical protein CBG18952 [Caenorhabditis briggsae] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001453 EMBL-EBI Molybdenum cofactor biosynthesis protein 2.6E-39
Sequence
Target Sequence 
>C. ELEGANS:186066_AT
cctcacacgcattcatttctagacattttcagaaaatgcgtagaaattctttgactaaca
tgctcggcgagtttgtcggattcaatcgatctccaggagcacggctctcatcgctttcga
atcaagagctcaatcaagcagttaaggatgaaaaaaagtcatttaaggaacaagaagccg
aacgcccagaaaagagaaagccacgtcagagatacttgtcagaaggagacatccgcgtcg
tttcagcccatcctgtttcagtcagcgaattgaagagaggaatcagtggaatagatcgaa
catcagtgacagtatctggaaaccctggtggagacgaatcgtctgttaatgtggtgatgc
gagtgaagagtccaaaaatgagagatcgtccgacgagcttgatcgagagaatccgcagaa
agatcagctatacaaagactggagcaatcattgaatccgacgaagagaaggatcatattg
atgaggtggagctcggattctcaaatcgcagggattcgattcgttctgagcgattattca
ttccaattactcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCACACGCATTCATTTCTAGACA 39 269 125 Antisense
AATTCTTTGACTAACATGCTCGGCG 615 175 169 Antisense
ATGCTCGGCGAGTTTGTCGGATTCA 91 43 184 Antisense
AATCGATCTCCAGGAGCACGGCTCT 356 167 208 Antisense
GGCTCTCATCGCTTTCGAATCAAGA 492 539 227 Antisense
GAACAAGAAGCCGAACGCCCAGAAA 314 353 292 Antisense
CAGAAGGAGACATCCGCGTCGTTTC 137 205 344 Antisense
GAAACCCTGGTGGAGACGAATCGTC 559 357 443 Antisense
GATCGTCCGACGAGCTTGATCGAGA 710 417 508 Antisense
GCAGGGATTCGATTCGTTCTGAGCG 564 311 632 Antisense
GCGATTATTCATTCCAATTACTCCA 318 291 654 Antisense
Sequence Source Affymetrix Proprietary Database