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[186065_at]

Description W09G10.3 /REP_DB=WormBase Gene ID /WP=CE14768 /TR=O16638 /GB=AAB66110.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 57.3
(3)
A 		2.6
(-3)
A 		3.8
(-2.9)
A 		4.3
(-2.8)
A 		55
B 82.5
(3)
P 		46.5
(0.3)
A 		1.6
(-3)
A 		21
(-1.6)
A 		81
C 65.8
(3)
P 		24.3
(-3)
A 		24
(-3)
A 		24
(-3)
A 		42
avr 68.5
(3) 		24.5
(-1.5) 		9.8
(-3) 		16.4
(-2.3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 65.7
(3)
M 		31.5
(-0.5)
A 		40.9
(0.4)
A 		34.1
(-0.3)
A 		7.7
(-3)
A 		11.7
(-2.6)
A 		58
B 68
(3)
P 		34.5
(-0.2)
A 		4.7
(-3)
A 		39.2
(0.3)
A 		13.6
(-2.2)
A 		10.7
(-2.4)
A 		63
C 103.5
(3)
P 		42
(-0.7)
A 		2.9
(-3)
A 		18.3
(-2.1)
A 		4.5
(-2.9)
A 		4.6
(-2.9)
A 		101
avr 79.1
(3) 		36
(-0.7) 		16.2
(-2.4) 		30.5
(-1.1) 		8.6
(-3) 		9
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 20.9
(3)
A 		0.6
(-3)
A 		1
(-2.9)
A 		0.6
(-3)
A 		20
B 26.3
(3)
P 		11.5
(-0.4)
A 		0.4
(-3)
A 		4.5
(-2.1)
A 		26
C 21.8
(3)
P 		7
(-2)
A 		8.4
(-1.5)
A 		4
(-3)
A 		18
avr 23
(3) 		6.4
(-2) 		3.3
(-2.9) 		3
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 12.1
(3)
M 		11.2
(2.4)
A 		8.9
(1)
A 		8.7
(0.9)
A 		2.3
(-3)
A 		2.8
(-2.7)
A 		10
B 23.7
(3)
P 		11.5
(-0.2)
A 		1.1
(-3)
A 		10.4
(-0.5)
A 		5.5
(-1.8)
A 		4
(-2.2)
A 		23
C 38.4
(3)
P 		12.8
(-1.1)
A 		0.7
(-3)
A 		3.7
(-2.5)
A 		1.5
(-2.9)
A 		1.6
(-2.9)
A 		38
avr 24.7
(3) 		11.8
(-0.5) 		3.6
(-2.8) 		7.6
(-1.7) 		3.1
(-2.9) 		2.8
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5528
Sequence Type Exemplar sequence
Representative Public ID W09G10.3 NCBI
Target Description W09G10.3 /REP_DB=WormBase Gene ID /WP=CE14768 /TR=O16638 /GB=AAB66110.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062168(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062168 NCBI Caenorhabditis elegans W09G10.3 (W09G10.3) mRNA, complete cds. 9/11 A 
W09G10.3 ENSEMBL cdna:known chromosome:CEL140:II:3525166:3528510:-1 gene:W09G10.3 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024972 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3526619-3528376(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G10.3
Entrez Gene 173700 Entrez gene
SwissProt O16638 EMBL-EBI
WormBase CE29365 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66110 Hypothetical protein W09G10.3 [Caenorhabditis elegans] ref|NP_494569.1| W09G10.3 [Caenorhabditis elegans] 0.0
blast CAE73811 Hypothetical protein CBG21361 [Caenorhabditis briggsae] 1.0E-141
blast G88101 protein W09G10.3 [imported] - Caenorhabditis elegans 1.0E-57
Sequence
Target Sequence 
>C. ELEGANS:186065_AT
gtgggctgtgatcagaatgcgcacttttcgcagatctactcggaagtttgtttttgtttt
tttgacttttgggttttgggttttttgtgtgaattttcaacaagttcaggttttcagcgc
tgtttctagaatgagaaaaccaaagccaagagcatcagcgaagcaacgatctttggagag
gcactttggctcccggcaacccaccaaaaacaaatttctcaacgcaatctactggggaat
acgtcgatgtcagtattttttgtgctgctacgatgatgaggtggaagatgaattggagga
tgcgtcagcaaaccctttcaatacacaacctccaggccttgatcagctagttcagttgac
tgggttcaatcggaagtggatcatgtttatgtataggaattttaagcaggtgaaacagga
ctggaacatgattcatttgataggaaatatcgttctgatacttttttcagttggaatttt
tttactatctgttaccattgcagattttccggcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGCTGTGATCAGAATGCGCACT 264 489 15 Antisense
TGCGCACTTTTCGCAGATCTACTCG 150 585 32 Antisense
GTTCAGGTTTTCAGCGCTGTTTCTA 557 443 118 Antisense
GAGCATCAGCGAAGCAACGATCTTT 460 389 164 Antisense
TTTGGAGAGGCACTTTGGCTCCCGG 329 667 186 Antisense
ATTTCTCAACGCAATCTACTGGGGA 630 15 228 Antisense
GTCAGTATTTTTTGTGCTGCTACGA 391 465 263 Antisense
TGGAGGATGCGTCAGCAAACCCTTT 63 551 308 Antisense
CCCTTTCAATACACAACCTCCAGGC 153 231 327 Antisense
TCCAGGCCTTGATCAGCTAGTTCAG 230 591 345 Antisense
GTTACCATTGCAGATTTTCCGGCGC 63 429 505 Antisense
Sequence Source Affymetrix Proprietary Database