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[186064_at] 7TM chemoreceptor, srw family

Description Y46H3C.1 /REP_DB=WormBase Gene ID /WP=CE24312 /TR=Q9N4V8 /GB=AAF60623.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 29      6grp_cgc > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 53.3
(3)
A 		50
(-0.1)
A 		52.5
(2.2)
A 		47
(-3)
A 		6
B 68.4
(0.2)
A 		60.3
(-1.1)
A 		49.3
(-3)
A 		84.8
(3)
A 		36
C 95.6
(3)
A 		73.6
(1.4)
A 		12.3
(-3)
A 		95.7
(3)
A 		83
avr 72.4
(2.5) 		61.3
(0.7) 		38
(-3) 		75.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 55.7
(2.8)
A 		29.3
(-0.8)
A 		57.2
(3)
A 		38.9
(0.5)
A 		13.4
(-3)
A 		22.3
(-1.8)
A 		44
B 44.3
(0.8)
A 		39
(0.3)
A 		31.2
(-0.5)
A 		55.6
(1.9)
A 		5.6
(-3)
A 		66.8
(3)
A 		61
C 36.9
(-0.9)
A 		53.2
(0.3)
A 		68.1
(1.3)
A 		92.5
(3)
A 		6.5
(-3)
A 		54.2
(0.3)
A 		86
avr 45.6
(1.1) 		40.5
(0.6) 		52.2
(1.9) 		62.3
(3) 		8.5
(-3) 		47.8
(1.4) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 19.4
(3)
A 		10.9
(-1.1)
A 		13.7
(0.3)
A 		6.9
(-3)
A 		13
B 21.8
(3)
A 		14.9
(-1)
A 		11.4
(-3)
A 		18.1
(0.9)
A 		10
C 31.6
(3)
A 		21.2
(0.7)
A 		4.3
(-3)
A 		16.1
(-0.4)
A 		27
avr 24.3
(3) 		15.7
(-0.6) 		9.8
(-3) 		13.7
(-1.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.3
(1.4)
A 		10.4
(1.5)
A 		12.5
(3)
A 		9.9
(1.2)
A 		4
(-3)
A 		5.4
(-2)
A 		9
B 15.4
(0.5)
A 		13
(-0.2)
A 		7.6
(-1.6)
A 		14.7
(0.3)
A 		2.3
(-3)
A 		24.9
(3)
A 		23
C 13.7
(1.2)
A 		16.2
(2.1)
A 		17.3
(2.5)
A 		18.6
(3)
A 		2.1
(-3)
A 		18.2
(2.9)
A 		17
avr 13.1
(1.6) 		13.2
(1.7) 		12.5
(1.3) 		14.4
(2.2) 		2.8
(-3) 		16.2
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15605
Sequence Type Exemplar sequence
Representative Public ID Y46H3C.1 NCBI
Target Description Y46H3C.1 /REP_DB=WormBase Gene ID /WP=CE24312 /TR=Q9N4V8 /GB=AAF60623.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071087 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-100) (srw-100) mRNA, complete cds. 11/11 None
GENEFINDER00000038933 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1707829:1715228:1 11/11 None
Y46H3C.1 ENSEMBL cdna:known chromosome:CEL140:V:1711220:1715228:1 gene:Y46H3C.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038927 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1711219-1715228(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-100
Ensembl Y46H3C.1
Entrez Gene 189964 Entrez gene
SwissProt Q9N4V8 EMBL-EBI
WormBase CE24312 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60623 Serpentine receptor, class w protein 100 [Caenorhabditis elegans] ref|NP_503488.1| Serpentine Receptor, class W family member (srw-100) [Caenorhabditis elegans] 0.0
blast AAF60624 Serpentine receptor, class w protein 99 [Caenorhabditis elegans] ref|NP_503487.1| Serpentine Receptor, class W family member (srw-99) [Caenorhabditis elegans] 0.0
blast AAP40514 Serpentine receptor, class w protein 103 [Caenorhabditis elegans] ref|NP_503489.2| Serpentine Receptor, class W family member (srw-103) [Caenorhabditis elegans] 1.0E-107
blast AAP40514 Serpentine receptor, class w protein 103 [Caenorhabditis elegans] ref|NP_503489.2| Serpentine Receptor, class W family member (srw-103) [Caenorhabditis elegans] 1.0E-106
blast AAP40512 Serpentine receptor, class w protein 102 [Caenorhabditis elegans] ref|NP_001024316.1| Serpentine Receptor, class W family member (srw-102) [Caenorhabditis elegans] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503488.1 7 20-42,55-74,106-128,148-170,217-239,259-281,301-323
Y46H3C.1 7 20-42,55-74,106-128,148-170,217-239,259-281,301-323
GENEFINDER00000038933 11 20-42,54-73,141-160,266-288,303-325,398-420,482-504,524-546,593-615,635-657,677-699
Sequence
Target Sequence 
>C. ELEGANS:186064_AT
ttttcctcagtgctctattatcagtattttatcaattcagatttgtagttatagaaaatc
gtagttttcccttaccacaagtttgcgcccagtaccagaataccaacaatgtaccgaaat
tctcagttgcactttctccgttgtttagcaacaacgatagaattgtgctcagagcctacc
tgctctttgatataattgtcagcaagtttttaccatgcatcgcttttgcactacttacta
tatttttaattcgggttctaaagaacgtgaaaaaaagtacaagcagtgcccgcttcatca
aggagaacaaaacggatttgagcacaaagctcataggttacatgaccgttggattcttca
tcactggcactccactaggcattatttatctcacaaaagcatttttcgacaaatctgaag
ctgttgtaatactctctacagacctggccctttactttctcgttttggtcactataaacg
cgattcttcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCTCAGTGCTCTATTATCAGT 433 677 470 Antisense
TTGCGCCCAGTACCAGAATACCAAC 310 701 552 Antisense
GAAATTCTCAGTTGCACTTTCTCCG 612 363 585 Antisense
GAATTGTGCTCAGAGCCTACCTGCT 586 323 629 Antisense
GCAAGTTTTTACCATGCATCGCTTT 332 321 671 Antisense
ATCGCTTTTGCACTACTTACTATAT 177 37 688 Antisense
AAAGTACAAGCAGTGCCCGCTTCAT 53 123 743 Antisense
TCACTGGCACTCCACTAGGCATTAT 421 627 830 Antisense
TGTAATACTCTCTACAGACCTGGCC 404 559 894 Antisense
TTTACTTTCTCGTTTTGGTCACTAT 426 673 920 Antisense
GTCACTATAAACGCGATTCTTCATC 424 465 937 Antisense
Sequence Source Affymetrix Proprietary Database