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[186062_at]

Description Y45F10C.4 /REP_DB=WormBase Gene ID /WP=CE16638 /TR=O45944 /GB=CAB16479.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 21.4
(-2.3)
A 		10.4
(-3)
A 		47.6
(-0.7)
A 		107.5
(3)
A 		97
B 15
(-3)
A 		44.8
(-1.6)
A 		17.9
(-2.9)
A 		139.8
(3)
M 		125
C 33.8
(-1.8)
A 		62.9
(-0.4)
A 		10.5
(-3)
A 		130
(3)
P 		120
avr 23.4
(-3) 		39.4
(-2.1) 		25.3
(-2.9) 		125.8
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1123
1 2 3 4 5 6 range
A 7.9
(-3)
A 		29.9
(-2.9)
A 		45.9
(-2.8)
P 		72.8
(-2.6)
A 		956.7
(3)
P 		450.7
(-0.2)
P 		949
B 14.3
(-3)
A 		25.3
(-2.9)
A 		28.1
(-2.9)
A 		65
(-2.7)
P 		1130.8
(3)
P 		318.7
(-1.4)
P 		1117
C 15.7
(-3)
A 		50.4
(-2.8)
P 		41.6
(-2.8)
A 		76
(-2.6)
A 		1012.9
(3)
P 		459.7
(-0.3)
P 		997
avr 12.6
(-3) 		35.2
(-2.9) 		38.5
(-2.8) 		71.3
(-2.7) 		1033.5
(3) 		409.7
(-0.7) 		1021
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 7.8
(-0.5)
A 		2.3
(-3)
A 		12.4
(1.5)
A 		15.7
(3)
A 		13
B 4.8
(-2.8)
A 		11.1
(-1.4)
A 		4.1
(-3)
A 		29.8
(3)
M 		26
C 11.2
(-0.5)
A 		18.1
(1.8)
A 		3.6
(-3)
A 		21.9
(3)
P 		18
avr 7.9
(-2.5) 		10.5
(-1.6) 		6.7
(-3) 		22.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 1.5
(-3)
A 		10.6
(-2.8)
A 		10
(-2.8)
P 		18.5
(-2.6)
A 		288.7
(3)
P 		109.7
(-0.7)
P 		287
B 5
(-3)
A 		8.4
(-3)
A 		6.8
(-3)
A 		17.2
(-2.8)
P 		459.4
(3)
P 		118.8
(-1.5)
P 		454
C 5.8
(-3)
A 		15.4
(-2.8)
P 		10.6
(-2.9)
A 		15.3
(-2.8)
A 		327.8
(3)
P 		153.9
(-0.2)
P 		322
avr 4.1
(-3) 		11.5
(-2.9) 		9.1
(-2.9) 		17
(-2.8) 		358.6
(3) 		127.5
(-0.9) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10334
Sequence Type Exemplar sequence
Representative Public ID Y45F10C.4 NCBI
Target Description Y45F10C.4 /REP_DB=WormBase Gene ID /WP=CE16638 /TR=O45944 /GB=CAB16479.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070239 NCBI Caenorhabditis elegans Y45F10C.4 (Y45F10C.4) mRNA, complete cds. 11/11 None
Y45F10C.4 ENSEMBL cdna:known chromosome:CEL140:IV:13663369:13664133:-1 gene:Y45F10C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13663400-13664139(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10C.4
Entrez Gene 178335 Entrez gene
SwissProt O45944 EMBL-EBI
WormBase CE16638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16479 Hypothetical protein Y45F10C.4 [Caenorhabditis elegans] ref|NP_502640.1| Y45F10C.4 [Caenorhabditis elegans] 6.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 1.4E-76
Sequence
Target Sequence 
>C. ELEGANS:186062_AT
tttactctcattcgtcgtggctatcatttctggaagtttcagttctattagcgaggaatg
gaaggcagtctgcgaatgcaatttgtcaaagctcaataatcatgcgaaaaccggaaattg
caagacaaccgccttgtggaaagtcacaagtgatacaaactgcactgcgtcagaatactt
gaagattactgtattcccagctaatgatgatcctctcaatagagttgaacaatgtacaat
gacaccatgtgaccaaaccgagaagactcctgctgactgcaatgtagcgttttccgctgc
aaaacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACTCTCATTCGTCGTGGCTATC 396 673 39 Antisense
TCGTCGTGGCTATCATTTCTGGAAG 465 605 50 Antisense
GGAAGTTTCAGTTCTATTAGCGAGG 3 531 70 Antisense
GGCAGTCTGCGAATGCAATTTGTCA 576 535 102 Antisense
AGACAACCGCCTTGTGGAAAGTCAC 203 71 161 Antisense
GTGATACAAACTGCACTGCGTCAGA 710 483 188 Antisense
ATTCCCAGCTAATGATGATCCTCTC 449 9 231 Antisense
TGACACCATGTGACCAAACCGAGAA 233 569 278 Antisense
AAACCGAGAAGACTCCTGCTGACTG 661 125 293 Antisense
CTGACTGCAATGTAGCGTTTTCCGC 82 239 311 Antisense
GTAGCGTTTTCCGCTGCAAAACTTG 127 457 322 Antisense
Sequence Source Affymetrix Proprietary Database