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[186059_at]

Description F41H10.1 /REP_DB=WormBase Gene ID /WP=CE10272 /TR=Q20302 /GB=AAK29801.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 11.2
(-3)
A 		30.8
(-0.2)
A 		53.2
(3)
A 		47.3
(2.2)
A 		42
B 3.4
(-3)
A 		5.9
(-0.7)
A 		10
(3)
A 		6.1
(-0.5)
A 		7
C 23.6
(2.4)
A 		10.3
(-2.1)
A 		7.8
(-3)
A 		25.3
(3)
A 		18
avr 12.7
(-3) 		15.7
(-1.7) 		23.7
(1.9) 		26.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.4
(-2.8)
A 		22.5
(3)
A 		4.8
(-2.4)
A 		11.1
(-0.5)
A 		2.7
(-3)
A 		4.2
(-2.5)
A 		20
B 2.7
(-3)
A 		5.2
(0.8)
A 		6.7
(3)
A 		2.7
(-3)
A 		4.4
(-0.5)
A 		3.1
(-2.4)
A 		4
C 3.9
(-2.4)
A 		3
(-2.6)
A 		3.8
(-2.4)
A 		24.7
(3)
A 		15.3
(0.6)
A 		1.4
(-3)
A 		23
avr 3.3
(-2.8) 		10.2
(1.4) 		5.1
(-1.7) 		12.8
(3) 		7.5
(-0.2) 		2.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.1
(-3)
A 		6.7
(-1.4)
A 		13.9
(3)
A 		6.9
(-1.3)
A 		10
B 1.1
(-3)
A 		1.5
(-1)
A 		2.3
(3)
A 		1.3
(-2)
A 		1
C 7.8
(3)
A 		3
(-2.6)
A 		2.7
(-3)
A 		4.3
(-1.1)
A 		5
avr 4.3
(-1.6) 		3.7
(-3) 		6.3
(3) 		4.2
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-3)
A 		8
(3)
A 		1
(-2.7)
A 		2.8
(-1.2)
A 		0.8
(-2.8)
A 		1
(-2.7)
A 		7
B 1
(-1.4)
A 		1.7
(2.5)
A 		1.6
(1.9)
A 		0.7
(-3)
A 		1.8
(3)
A 		1.2
(-0.3)
A 		1
C 1.5
(-1.7)
A 		0.9
(-2.5)
A 		1
(-2.3)
A 		5
(3)
A 		4.9
(2.9)
A 		0.5
(-3)
A 		5
avr 1
(-2.8) 		3.5
(3) 		1.2
(-2.3) 		2.8
(1.4) 		2.5
(0.7) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10429
Sequence Type Exemplar sequence
Representative Public ID F41H10.1 NCBI
Target Description F41H10.1 /REP_DB=WormBase Gene ID /WP=CE10272 /TR=Q20302 /GB=AAK29801.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068395 NCBI Caenorhabditis elegans F41H10.12 (F41H10.12) mRNA, complete cds. 11/11 None
SNAP00000003911 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5384970:5386069:1 11/11 None
GENEFINDER00000003924 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5382897:5386069:1 11/11 None
F41H10.12 ENSEMBL cdna:known chromosome:CEL140:IV:5385309:5386069:1 gene:F41H10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5382902-5386075(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41H10.12
Entrez Gene 260206 Entrez gene
SwissProt Q95QG6 EMBL-EBI
WormBase CE29499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast G88690 protein F41H10.1 [imported] - Caenorhabditis elegans 0.0
blast G88690 protein F41H10.1 [imported] - Caenorhabditis elegans 1.0E-144
blast AAL08035 Hypothetical protein F41H10.12 [Caenorhabditis elegans] ref|NP_500796.1| F41H10.12 [Caenorhabditis elegans] 1.0E-131
blast G88690 protein F41H10.1 [imported] - Caenorhabditis elegans 1.0E-131
blast AAL08035 Hypothetical protein F41H10.12 [Caenorhabditis elegans] ref|NP_500796.1| F41H10.12 [Caenorhabditis elegans] 1.0E-130
blast CAB62797 Hypothetical protein C04F12.7 [Caenorhabditis elegans] ref|NP_492579.1| C04F12.7 [Caenorhabditis elegans] 4.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003924 3 21-43,85-107,141-163
Sequence
Target Sequence 
>C. ELEGANS:186059_AT
ggacaagttctattcccagttgtgggtggaaactcattgatacctggccgagtgttagga
ggagatagaacaccactgatcatccaagtgtcagttggttttgaaaccttatcaacggca
ttagcaggattcggacgcttcatctatctaccatcaatgatatttgttgaattgcaaaga
gctcaccagttacatgcgcattatccattttcgaaaggattcaatttcaacaatcttgga
ataatgcagactaatttttcaaagcaacatgaaaaacgacgactcgaaatgacccatgtt
cttcaaatgttcaatggacttagaatccaactatcgacgatcttctcacaagctgcaaaa
caacaagctgattctctagaagaacagatgcgtgaagatatcaagaagatagcaacattt
gattcatctccggaagcgacggaaaacagcttctctgtcgaagaagaggattatagctat
aagctgaatggtgtcataatttttgaaggagaaaatcgggacgaaggtcatttcttgttc
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAAGTTCTATTCCCAGTTGTGG 48 527 829 Antisense
GGAAACTCATTGATACCTGGCCGAG 477 525 856 Antisense
GAACACCACTGATCATCCAAGTGTC 275 351 896 Antisense
GAAACCTTATCAACGGCATTAGCAG 121 359 931 Antisense
TAGCAGGATTCGGACGCTTCATCTA 293 651 950 Antisense
ACGCTTCATCTATCTACCATCAATG 607 91 963 Antisense
AGCTCACCAGTTACATGCGCATTAT 557 79 1008 Antisense
ACGACGACTCGAAATGACCCATGTT 272 93 1104 Antisense
AACTATCGACGATCTTCTCACAAGC 379 139 1157 Antisense
TAGCAACATTTGATTCATCTCCGGA 396 651 1238 Antisense
GGGACGAAGGTCATTTCTTGTTCAG 398 495 1346 Antisense
Sequence Source Affymetrix Proprietary Database