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[186053_at]

Description R07C12.3 /REP_DB=WormBase Gene ID /WP=CE17206 /TR=O44523 /GB=AAB94152.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 25      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 7.7
(-3)
A 		25.9
(-0.7)
A 		44.4
(1.7)
A 		55
(3)
A 		47
B 36.8
(0.2)
A 		15.2
(-3)
A 		49
(2)
A 		56
(3)
A 		41
C 8.4
(-3)
A 		89.5
(3)
A 		10.5
(-2.8)
A 		75.4
(2)
A 		81
avr 17.6
(-3) 		43.5
(0.5) 		34.6
(-0.7) 		62.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 8.8
(-3)
A 		40.6
(-0)
A 		67.7
(2.5)
A 		73.3
(3)
A 		42.5
(0.1)
A 		48.4
(0.7)
A 		65
B 7.7
(-3)
A 		79.3
(2.9)
A 		73
(2.4)
A 		43.6
(-0.1)
A 		80.8
(3)
A 		51.2
(0.6)
A 		73
C 34
(-0.9)
A 		64.3
(2.2)
A 		72.1
(3)
A 		58.7
(1.6)
A 		56.9
(1.4)
A 		13.8
(-3)
A 		58
avr 16.8
(-3) 		61.4
(1.9) 		70.9
(3) 		58.5
(1.6) 		60.1
(1.8) 		37.8
(-0.7) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.8
(-3)
A 		5.6
(-1.1)
A 		11.6
(3)
A 		8.1
(0.6)
A 		9
B 11.7
(2.9)
A 		3.8
(-3)
A 		11.4
(2.6)
A 		11.9
(3)
A 		8
C 2.8
(-3)
A 		25.7
(3)
A 		3.6
(-2.8)
A 		12.7
(-0.4)
A 		23
avr 5.8
(-3) 		11.7
(3) 		8.9
(0.2) 		10.9
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.6
(-3)
A 		14.5
(1.6)
A 		14.7
(1.6)
A 		18.6
(3)
A 		12.8
(1)
A 		11.8
(0.6)
A 		17
B 2.7
(-3)
A 		26.4
(1.7)
A 		17.7
(-0)
A 		11.6
(-1.2)
A 		32.8
(3)
A 		19.1
(0.3)
A 		30
C 12.6
(0.2)
A 		19.6
(3)
A 		18.3
(2.5)
A 		11.8
(-0.1)
A 		18.4
(2.5)
A 		4.6
(-3)
A 		15
avr 5.6
(-3) 		20.2
(2.6) 		16.9
(1.3) 		14
(0.2) 		21.3
(3) 		11.8
(-0.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11014
Sequence Type Exemplar sequence
Representative Public ID R07C12.3 NCBI
Target Description R07C12.3 /REP_DB=WormBase Gene ID /WP=CE17206 /TR=O44523 /GB=AAB94152.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068093 NCBI Caenorhabditis elegans R07C12.3 (R07C12.3) mRNA, complete cds. 11/11 None
SNAP00000022102 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4145077:4147057:1 9/11 None
GENEFINDER00000022105 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4145077:4147057:1 9/11 None
R07C12.3 ENSEMBL cdna:known chromosome:CEL140:IV:4144544:4147250:1 gene:R07C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4144549-4147256(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C12.3
Entrez Gene 187674 Entrez gene
SwissProt O44523 EMBL-EBI
WormBase CE17206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94152 Hypothetical protein R07C12.3 [Caenorhabditis elegans] ref|NP_500494.1| R07C12.3 [Caenorhabditis elegans] 0.0
blast AAB94152 Hypothetical protein R07C12.3 [Caenorhabditis elegans] ref|NP_500494.1| R07C12.3 [Caenorhabditis elegans] 1.0E-139
blast AAB94150 Hypothetical protein R07C12.1 [Caenorhabditis elegans] ref|NP_500497.1| R07C12.1 [Caenorhabditis elegans] 1.0E-101
blast AAB94150 Hypothetical protein R07C12.1 [Caenorhabditis elegans] ref|NP_500497.1| R07C12.1 [Caenorhabditis elegans] 4.0E-97
blast AAA98026 Hypothetical protein K08D10.10 [Caenorhabditis elegans] ref|NP_500498.1| K08D10.10 [Caenorhabditis elegans] 8.0E-92
Sequence
Target Sequence 
>C. ELEGANS:186053_AT
ttcgaaacgatgaccaacttgccctttctcgacttcctactgttgggatatactggcctt
tacccctctacgcggaaaattcgatagtctccggcaatggcttcactgtactgcctccgc
taatccaaacaaaaccaagctgggtcaactttggagttgctgtgcagaatcatggcccta
ctgatacattccaatcattttatctctcttggtacaatgcttcatcatctactaatggaa
attttcatggatataaccctgattctgaggtgacatttcttacaagcattgatactaaac
cgtttatacctaaaaatggcacaattcgaacaagtatctctgaaatttatgctgctatct
acaacatgacacttgactattcatactcggacaattcgccaatcaaaattcagatcagac
tatacacttggataattcgacgaatattcgccgaatttgccgtttgctgttcagcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGAAACGATGACCAACTTGCCCT 416 695 578 Antisense
TTTCTCGACTTCCTACTGTTGGGAT 624 671 602 Antisense
TTGGGATATACTGGCCTTTACCCCT 229 707 620 Antisense
TACCCCTCTACGCGGAAAATTCGAT 503 641 638 Antisense
TCGATAGTCTCCGGCAATGGCTTCA 42 603 658 Antisense
TGCCTCCGCTAATCCAAACAAAACC 688 583 689 Antisense
GTTGCTGTGCAGAATCATGGCCCTA 309 439 733 Antisense
ATGGCCCTACTGATACATTCCAATC 107 53 749 Antisense
GATTCTGAGGTGACATTTCTTACAA 163 433 838 Antisense
TGACACTTGACTATTCATACTCGGA 402 571 944 Antisense
GAATTTGCCGTTTGCTGTTCAGCGG 690 325 1030 Antisense
Sequence Source Affymetrix Proprietary Database