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[186052_at]

Description Y105C5A.8 /REP_DB=WormBase Gene ID /WP=CE23189 /TR=Q9NF68 /GB=CAB54987.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 99      6grp_total > 88      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1864
1 2 3 4 range
A 602.6
(-1.7)
P 		269.3
(-3)
P 		312.5
(-2.8)
P 		1796.9
(3)
P 		1528
B 544
(-2.3)
P 		328.4
(-3)
P 		331.7
(-3)
P 		2132.8
(3)
P 		1804
C 592.1
(-1.9)
P 		394.2
(-2.7)
P 		319.4
(-3)
P 		1863.1
(3)
P 		1544
avr 579.6
(-2) 		330.6
(-3) 		321.2
(-3) 		1930.9
(3) 		1610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2195
1 2 3 4 5 6 range
A 544.4
(-3)
P 		645.4
(-2.6)
P 		796.7
(-2.1)
P 		715.7
(-2.4)
P 		1257.5
(-0.5)
P 		2271.1
(3)
P 		1727
B 486.8
(-3)
P 		646
(-2.5)
P 		884.4
(-1.7)
P 		578
(-2.7)
P 		1574.7
(0.5)
P 		2341.5
(3)
P 		1855
C 585.5
(-3)
P 		710.9
(-2.6)
P 		819.6
(-2.3)
P 		760.4
(-2.5)
P 		1196.8
(-1.3)
P 		2682.2
(3)
P 		2097
avr 538.9
(-3) 		667.4
(-2.6) 		833.6
(-2.1) 		684.7
(-2.5) 		1343
(-0.5) 		2431.6
(3) 		1893
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 219.4
(1.7)
P 		58.4
(-3)
P 		81.7
(-2.3)
P 		263
(3)
P 		205
B 173.5
(-1.5)
P 		81.1
(-2.9)
P 		76.9
(-3)
P 		454.5
(3)
P 		378
C 196
(-0.5)
P 		113.3
(-2.9)
P 		111.3
(-3)
P 		314.2
(3)
P 		203
avr 196.3
(-0.4) 		84.3
(-3) 		90
(-2.9) 		343.9
(3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 798
1 2 3 4 5 6 range
A 100.4
(-3)
P 		229.5
(-1.3)
P 		173.5
(-2)
P 		181.5
(-1.9)
P 		379.5
(0.7)
P 		553
(3)
P 		453
B 169.4
(-2.9)
P 		215
(-2.5)
P 		214.8
(-2.5)
P 		153.1
(-3)
P 		639.8
(1.1)
P 		873.1
(3)
P 		720
C 217
(-2.5)
P 		216.9
(-2.5)
P 		208.6
(-2.6)
P 		152.9
(-3)
P 		387.3
(-1.1)
P 		897.9
(3)
P 		745
avr 162.3
(-3) 		220.5
(-2.4) 		199
(-2.6) 		162.5
(-3) 		468.9
(0) 		774.7
(3) 		612
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8696
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.8 NCBI
Target Description Y105C5A.8 /REP_DB=WormBase Gene ID /WP=CE23189 /TR=Q9NF68 /GB=CAB54987.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070475(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070475 NCBI Caenorhabditis elegans Y105C5A.8 (Y105C5A.8) mRNA, complete cds. 10/11 None
GENEFINDER00000033769 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15612850:15617809:-1 10/11 None
Y105C5A.8 ENSEMBL cdna:known chromosome:CEL140:IV:15612850:15617809:-1 gene:Y105C5A.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033706 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15612855-15617815(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.8
Entrez Gene 190873 Entrez gene
SwissProt Q9NF68 EMBL-EBI
WormBase CE36219 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54987 Hypothetical protein Y105C5A.8 [Caenorhabditis elegans] ref|NP_502876.2| Y105C5A.8 [Caenorhabditis elegans] 0.0
blast CAE68078 Hypothetical protein CBG13710 [Caenorhabditis briggsae] 1.0E-116
blast CAE54887 Hypothetical protein C39E9.8b [Caenorhabditis elegans] ref|NP_001023053.1| C39E9.8b [Caenorhabditis elegans] 8.0E-39
Sequence
Target Sequence 
>C. ELEGANS:186052_AT
gactgctatcattcatcaaaacttcaagctttagattgctttgagacgtgttggaaatcg
gaaattcaacggttcaaattaacggacgatcctaactccctgaaagcatgttttgatgct
aaaaaaccatttgtggaccaagtgatcaactgtttccagacaaaagttaaagctttcacc
gaacctattttcaaaatattttttatatcaatcaattatcgtagtttattttccagatgc
acagagaatggtgaaccaggagttcgggtaaaggaatacgactacaaagatatgataaaa
cgagtggaagacgctgtgaactcacagattaacgcatttttgagatcaattggaaatgat
aatgttaaggccgtggtaaccgccggaactgccattgcccaatgcgtaaaaacatgtttc
ttggaaaagaataaagatggtttctgtttcaaccgaatcggttgtgaaccacaaattgaa
gacaaaaatgcacgaatcgccatccgtcagtgctctcggtcagtggcgtggaagaaggaa
atggagacgttctgtcattgttcaagtgctgctggaattaacggtctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCTATCATTCATCAAAACTTC 351 375 427 Antisense
CGATCCTAACTCCCTGAAAGCATGT 643 247 513 Antisense
GACCAAGTGATCAACTGTTTCCAGA 709 383 562 Antisense
TCGTAGTTTATTTTCCAGATGCACA 267 603 645 Antisense
GAACTCACAGATTAACGCATTTTTG 484 349 744 Antisense
GAACTGCCATTGCCCAATGCGTAAA 464 349 812 Antisense
GATGGTTTCTGTTTCAACCGAATCG 687 405 862 Antisense
AAAATGCACGAATCGCCATCCGTCA 683 131 911 Antisense
GCTCTCGGTCAGTGGCGTGGAAGAA 649 295 938 Antisense
AGACGTTCTGTCATTGTTCAAGTGC 125 69 971 Antisense
GTGCTGCTGGAATTAACGGTCTCTC 83 479 992 Antisense
Sequence Source Affymetrix Proprietary Database