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[186051_at]

Description F47C12.2 /REP_DB=WormBase Gene ID /WP=CE10672 /TR=Q20531 /GB=AAC24389.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 17
(-3)
A 		50.7
(0.6)
A 		46.2
(0.2)
A 		72.5
(3)
P 		56
B 34.3
(1.1)
A 		34.6
(1.3)
M 		37.5
(3)
P 		27.3
(-3)
A 		10
C 22.8
(-3)
A 		40.6
(0.2)
A 		25.4
(-2.5)
P 		56.7
(3)
P 		34
avr 24.7
(-3) 		42
(0.8) 		36.4
(-0.4) 		52.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 4.2
(-3)
A 		24.6
(-0.8)
A 		48.8
(1.7)
A 		28.2
(-0.4)
A 		60.6
(3)
P 		10.1
(-2.4)
A 		56
B 23.3
(-1.5)
P 		30.9
(0.3)
A 		42.6
(3)
P 		24.5
(-1.2)
A 		17.4
(-2.9)
A 		16.8
(-3)
A 		26
C 31.5
(3)
P 		17
(-2.2)
A 		18
(-1.9)
A 		29.2
(2.2)
A 		16.4
(-2.5)
A 		14.9
(-3)
A 		17
avr 19.7
(-1.5) 		24.2
(-0.3) 		36.5
(3) 		27.3
(0.6) 		31.5
(1.7) 		13.9
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.2
(-3)
A 		11
(1.9)
A 		12.1
(3)
A 		10.6
(1.5)
P 		6
B 10.9
(3)
A 		8.6
(0.3)
M 		8.7
(0.4)
P 		5.8
(-3)
A 		5
C 7.5
(-3)
A 		11.7
(3)
A 		8.9
(-1)
P 		9.6
(0)
P 		4
avr 8.2
(-3) 		10.4
(3) 		9.9
(1.6) 		8.7
(-1.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-3)
A 		8.8
(-0.3)
A 		10.6
(0.4)
A 		7.1
(-0.8)
A 		18.3
(3)
P 		2.5
(-2.4)
A 		18
B 8.1
(-0.3)
P 		10.3
(3)
A 		10.3
(3)
P 		6.5
(-2.7)
A 		7.1
(-1.8)
A 		6.3
(-3)
A 		4
C 11.7
(3)
P 		5.2
(-2.5)
A 		4.6
(-3)
A 		5.9
(-1.9)
A 		5.3
(-2.4)
A 		5
(-2.7)
A 		7
avr 6.9
(-0.5) 		8.1
(0.8) 		8.5
(1.2) 		6.5
(-1) 		10.2
(3) 		4.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11018
Sequence Type Exemplar sequence
Representative Public ID F47C12.2 NCBI
Target Description F47C12.2 /REP_DB=WormBase Gene ID /WP=CE10672 /TR=Q20531 /GB=AAC24389.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068053(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068053 NCBI Caenorhabditis elegans F47C12.2 (F47C12.2) mRNA, complete cds. 11/11 None
SNAP00000026882 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3989126:3991515:1 11/11 None
GENEFINDER00000026893 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3989126:3991434:1 11/11 None
F47C12.2 ENSEMBL cdna:known chromosome:CEL140:IV:3989126:3991515:1 gene:F47C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3989131-3991521(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47C12.2
Entrez Gene 185915 Entrez gene
SwissProt Q20531 EMBL-EBI
WormBase CE10672 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24389 Hypothetical protein F47C12.2 [Caenorhabditis elegans] ref|NP_500454.1| F47C12.2 [Caenorhabditis elegans] 0.0
blast CAE61466 Hypothetical protein CBG05359 [Caenorhabditis briggsae] 0.0
blast XP_396277 PREDICTED: similar to GA21569-PA [Apis mellifera] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 3.8E-13
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.8E-14
Pfam IPR000859 EMBL-EBI CUB 5.3E-20
Pfam IPR000859 EMBL-EBI CUB 9.8E-11
Sequence
Target Sequence 
>C. ELEGANS:186051_AT
caaggatcttacttctgttcttctggatcttgcatctccgagtcaaaaaagtgtaatgga
cataatgattgtgacgatgggagtgacgagcaaaactgtccatcggctttccagccgaat
tgtaggacttatgagaagggagaaagtgggcagttgagctctacgaattacccaaattca
tatgacccaaatttgaattgccgacatgtgctcgaaggaccgattaattcaagaatcgag
ctaacaattgaacattttgagacagagccagactttgatatccttacagtcctggatgga
ggtccagcggaaaatagtaccacagttataaaacgtctctctggatccatggaaacggtt
caaactatcacatcggccacgaatatgatgatcgtacagttcaggaccgacgctcaatcg
aatgccagaggatggcagttgaagtggagagctgtcccattcacctgtggaggccacttt
accgcccaggcctacatccaatcctttgtctctcccggctacccaaagacctttgcaaat
ggcgccgaatgtgtgtggactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGGATCTTACTTCTGTTCTTCTG 457 183 565 Antisense
TTCTTCTGGATCTTGCATCTCCGAG 84 691 582 Antisense
GACGAGCAAAACTGTCCATCGGCTT 608 379 649 Antisense
GGCAGTTGAGCTCTACGAATTACCC 215 535 713 Antisense
TGCCGACATGTGCTCGAAGGACCGA 683 583 763 Antisense
GAGCCAGACTTTGATATCCTTACAG 303 385 829 Antisense
AAAACGTCTCTCTGGATCCATGGAA 55 131 894 Antisense
TACAGTTCAGGACCGACGCTCAATC 84 641 959 Antisense
GAAGTGGAGAGCTGTCCCATTCACC 193 335 1005 Antisense
CAAAGACCTTTGCAAATGGCGCCGA 273 193 1088 Antisense
ATGGCGCCGAATGTGTGTGGACTGT 563 53 1103 Antisense
Sequence Source Affymetrix Proprietary Database