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[186049_at]

Description F52C12.4 /REP_DB=WormBase Gene ID /WP=CE19437 /TR=Q9TXV4 /GB=AAC68958.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 18.2
(-3)
A 		164.4
(3)
A 		27.9
(-2.6)
A 		39.6
(-2.1)
A 		146
B 64
(-0.1)
A 		109.8
(3)
A 		21.6
(-3)
A 		86.8
(1.4)
A 		88
C 78.5
(1.3)
A 		20.4
(-3)
A 		61.7
(0.1)
A 		100.8
(3)
A 		80
avr 53.6
(-1.4) 		98.2
(3) 		37.1
(-3) 		75.7
(0.8) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 23.5
(-1.9)
A 		8.7
(-3)
A 		21.5
(-2.1)
A 		80.2
(2.1)
A 		8.4
(-3)
A 		93
(3)
A 		85
B 105.4
(3)
A 		57.3
(-0.2)
A 		33.1
(-1.8)
A 		23.6
(-2.4)
A 		59.7
(-0)
A 		15.3
(-3)
A 		90
C 89.6
(3)
A 		64.8
(1)
A 		26.8
(-2.1)
A 		22.7
(-2.4)
A 		19.2
(-2.7)
A 		15.9
(-3)
A 		74
avr 72.8
(3) 		43.6
(-0.8) 		27.1
(-3) 		42.2
(-1) 		29.1
(-2.7) 		41.4
(-1.1) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 6.6
(-2.8)
A 		35.7
(3)
A 		7.3
(-2.7)
A 		5.8
(-3)
A 		30
B 20.4
(1.2)
A 		27.1
(3)
A 		5
(-3)
A 		18.5
(0.7)
A 		22
C 26
(3)
A 		5.9
(-3)
A 		21.5
(1.7)
A 		17
(0.3)
A 		20
avr 17.7
(0.3) 		22.9
(3) 		11.3
(-3) 		13.8
(-1.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.3
(-2.5)
A 		3.1
(-2.8)
A 		4.7
(-2.3)
A 		20.3
(2.3)
A 		2.5
(-3)
A 		22.7
(3)
A 		20
B 36.7
(3)
A 		19.1
(-0.4)
A 		8
(-2.6)
A 		6.2
(-2.9)
A 		24.3
(0.6)
A 		5.7
(-3)
A 		31
C 33.2
(3)
A 		19.8
(0.2)
A 		6.8
(-2.5)
A 		4.6
(-3)
A 		6.2
(-2.7)
A 		5.3
(-2.9)
A 		29
avr 24.7
(3) 		14
(-0.5) 		6.5
(-3) 		10.4
(-1.7) 		11
(-1.5) 		11.2
(-1.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10833
Sequence Type Exemplar sequence
Representative Public ID F52C12.4 NCBI
Target Description F52C12.4 /REP_DB=WormBase Gene ID /WP=CE19437 /TR=Q9TXV4 /GB=AAC68958.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067744 NCBI Caenorhabditis elegans F52C12.4 (F52C12.4) mRNA, complete cds. 11/11 None
SNAP00000001423 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1924007:1943910:1 11/11 None
GENEFINDER00000001432 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1930861:1943910:1 11/11 None
F52C12.4 ENSEMBL cdna:known chromosome:CEL140:IV:1923570:1946202:1 gene:F52C12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1923575-1943916(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C12.4
Entrez Gene 186100 Entrez gene
SwissProt Q9TXV4 EMBL-EBI
WormBase CE31535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68958 Hypothetical protein F52C12.4 [Caenorhabditis elegans] ref|NP_500145.2| F52C12.4 [Caenorhabditis elegans] 0.0
blast CAE65557 Hypothetical protein CBG10547 [Caenorhabditis briggsae] 0.0
blast BAE33131.1 unnamed protein product [Mus musculus] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR005112 EMBL-EBI dDENN domain 8.6E-34
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 1.9E-83
Pfam IPR005113 EMBL-EBI uDENN domain 1.0E-7
Pfam IPR005112 EMBL-EBI dDENN domain 8.6E-34
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 4.7E-62
Pfam IPR005113 EMBL-EBI uDENN domain 1.0E-7
Pfam IPR005112 EMBL-EBI dDENN domain 4.2E-9
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 4.7E-62
Sequence
Target Sequence 
>C. ELEGANS:186049_AT
acgatgacgtcatgccgtctcgattccgtctcggcgtttccacactattgaacaaatccg
tcggtgcaatgggctctggaatgatttattcggacgatcgggcttctgcggaaaatccgt
tctttgtgaatccaaaagatccggcttatgtgctagattcgggcgtaccgaactgtctgc
tgcgggaggaatattggatgcgtgaggtgtatttgcagttgaaacggagccgtgagcggg
ttgaaaagggtcagaaaagcgaggaaaacgaggagatttccgatggaatagcggatttcc
cccaattctccgcaaaaactccaggaaaactggaggtgatcctgtgcaccgccacctact
gcccgtcatgccgaacaatggtctacgatgaggaaatcatggccggctggaaagttgacg
atcagaatttgaacacaatatgcccacactgctcgggaagcggaacggcgacagacgccg
tctccaacgaaaccgcagccattcaggagagcgttttcgcgccgagactcaaaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATGACGTCATGCCGTCTCGATT 710 93 3761 Antisense
TCGGCGTTTCCACACTATTGAACAA 551 605 3791 Antisense
CAAATCCGTCGGTGCAATGGGCTCT 602 193 3813 Antisense
TTTATTCGGACGATCGGGCTTCTGC 298 673 3845 Antisense
TACCGAACTGTCTGCTGCGGGAGGA 194 645 3926 Antisense
CCCAATTCTCCGCAAAAACTCCAGG 528 229 4061 Antisense
AACTGGAGGTGATCCTGTGCACCGC 274 143 4088 Antisense
CAATATGCCCACACTGCTCGGGAAG 507 179 4196 Antisense
GAACGGCGACAGACGCCGTCTCCAA 479 347 4223 Antisense
GCCATTCAGGAGAGCGTTTTCGCGC 323 281 4258 Antisense
GTTTTCGCGCCGAGACTCAAAATTC 210 449 4273 Antisense
Sequence Source Affymetrix Proprietary Database