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[186045_at]

Description Y44E3A.5 /REP_DB=WormBase Gene ID /WP=CE21930 /TR=Q9TXZ0 /GB=AAC78231.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 19      6grp_total > 47      4grp_total > 15      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 137.1
(3)
P 		128.1
(-0.6)
P 		129.3
(-0.1)
A 		122
(-3)
P 		15
B 126.6
(3)
M 		84.4
(-3)
M 		98.8
(-1)
P 		111.7
(0.9)
P 		42
C 100.7
(-2.6)
P 		103.4
(-2.2)
P 		97.7
(-3)
M 		138
(3)
P 		40
avr 121.5
(2.2) 		105.3
(-3) 		108.6
(-1.9) 		123.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 85.9
(2.7)
A 		67.6
(-1.4)
A 		80.4
(1.5)
A 		87.3
(3)
A 		60.5
(-3)
A 		81.9
(1.8)
A 		27
B 92.9
(0.5)
P 		94
(0.5)
P 		52.5
(-2.3)
A 		57.1
(-2)
P 		41.6
(-3)
A 		130.5
(3)
P 		89
C 90.1
(2.3)
M 		93.2
(2.6)
P 		32.5
(-3)
A 		97.1
(3)
M 		61.3
(-0.3)
A 		78.6
(1.3)
P 		65
avr 89.6
(2) 		84.9
(1.3) 		55.1
(-2.9) 		80.5
(0.7) 		54.5
(-3) 		97
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 49.9
(3)
P 		27.8
(-1.1)
P 		33.8
(-0)
A 		17.9
(-3)
P 		32
B 40.4
(3)
M 		20.9
(-3)
M 		22.9
(-2.4)
P 		23.8
(-2.1)
P 		20
C 33.3
(2.6)
P 		29.7
(0.6)
P 		34.1
(3)
M 		23.3
(-3)
P 		11
avr 41.2
(3) 		26.1
(-1.6) 		30.3
(-0.4) 		21.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 15.8
(-3)
A 		24
(3)
A 		17.5
(-1.8)
A 		22.1
(1.6)
A 		18.3
(-1.2)
A 		19.9
(-0)
A 		8
B 32.3
(0.3)
P 		31.3
(0.1)
P 		12.7
(-3)
A 		15.1
(-2.6)
P 		16.9
(-2.3)
A 		48.7
(3)
P 		36
C 33.4
(3)
M 		28.4
(1.8)
P 		8.3
(-3)
A 		19.5
(-0.3)
M 		19.8
(-0.3)
A 		26.3
(1.3)
P 		25
avr 27.2
(1.6) 		27.9
(1.8) 		12.8
(-3) 		18.9
(-1.1) 		18.3
(-1.2) 		31.6
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.127
Sequence Type Exemplar sequence
Representative Public ID Y44E3A.5 NCBI
Target Description Y44E3A.5 /REP_DB=WormBase Gene ID /WP=CE21930 /TR=Q9TXZ0 /GB=AAC78231.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058742 NCBI Caenorhabditis elegans Y44E3A.4 (Y44E3A.4) mRNA, complete cds. 11/11 None
SNAP00000005139 ENSEMBL cdna:SNAP chromosome:CEL140:I:3319854:3332582:-1 11/11 None
GENEFINDER00000005141 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3319854:3330955:-1 11/11 None
Y44E3A.4 ENSEMBL cdna:known chromosome:CEL140:I:3320922:3330674:-1 gene:Y44E3A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3326443-3329943(-) 98.12 98.12
Public Domain and Genome References
Gene Title
Ensembl Y44E3A.4
Entrez Gene 171906 Entrez gene
SwissProt Q6A573 EMBL-EBI
WormBase CE37064 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587122_AT similar to SH3-domain kinase binding protein 1 isoform b cfa
CANINE:1587557_AT similar to SH3-domain kinase binding protein 1 isoform b cfa
CANINE_2:CFA.10263.1.A1_AT similar to SH3-domain kinase binding protein 1 isoform b cfa
CANINE_2:CFAAFFX.20247.1.S1_S_AT similar to SH3-domain kinase binding protein 1 isoform b cfa
CHICKEN:GGA.3379.1.S1_AT SH3-domain kinase binding protein 1 gga
CHICKEN:GGA.3379.3.S1_AT SH3-domain kinase binding protein 1 gga
CHICKEN:GGA.3379.3.S1_S_AT SH3-domain kinase binding protein 1 gga
CHICKEN:GGAAFFX.11430.1.S1_S_AT SH3-domain kinase binding protein 1 gga
CHICKEN:GGA.3379.2.S1_AT Similar to SH3-domain kinase binding protein 1; c-Cbl-interacting protein gga
HU35KSUBD:RC_AA357239_AT SH3-domain kinase binding protein 1 hs
HU35KSUBD:RC_AA477483_AT SH3-domain kinase binding protein 1 hs
HG-U133B:223082_AT SH3-domain kinase binding protein 1 hs
HG-U133_PLUS_2:223082_AT SH3-domain kinase binding protein 1 hs
U133_X3P:G7188748_3P_AT SH3-domain kinase binding protein 1 hs
U133_X3P:HS2AFFX.1.52.S1_3P_AT SH3-domain kinase binding protein 1 hs
U133_X3P:HS2.153260.2.S1_3P_S_AT SH3-domain kinase binding protein 1 hs
HG-U133_PLUS_2:1553588_AT SH3-domain kinase binding protein 1 hs
HG-U133_PLUS_2:1554168_A_AT SH3-domain kinase binding protein 1 hs
HG-U95E:83386_AT SH3-domain kinase binding protein 1 hs
HG-U133_PLUS_2:237708_AT SH3-domain kinase binding protein 1 hs
HG-U133B:237708_AT SH3-domain kinase binding protein 1 hs
HG-U95D:83336_AT SH3-domain kinase binding protein 1 hs
U133_X3P:HS.232417.0.A1_3P_AT SH3-domain kinase binding protein 1 hs
MOUSE430_2:1431592_A_AT SH3-domain kinase binding protein 1 mm
MOE430A:1431592_A_AT SH3-domain kinase binding protein 1 mm
MOUSE430A_2:1431592_A_AT SH3-domain kinase binding protein 1 mm
MG-U74BV2:112378_AT SH3-domain kinase binding protein 1 mm
MG-U74CV2:134659_R_AT SH3-domain kinase binding protein 1 mm
MG-U74BV2:164708_I_AT SH3-domain kinase binding protein 1 mm
MG-U74BV2:163953_AT SH3-domain kinase binding protein 1 mm
MOE430A:1460337_AT SH3-domain kinase binding protein 1 mm
MOUSE430A_2:1460337_AT SH3-domain kinase binding protein 1 mm
MOUSE430_2:1460337_AT SH3-domain kinase binding protein 1 mm
MOE430A:1432269_A_AT SH3-domain kinase binding protein 1 mm
MOUSE430A_2:1432269_A_AT SH3-domain kinase binding protein 1 mm
MOUSE430_2:1432269_A_AT SH3-domain kinase binding protein 1 mm
MOE430B:1456261_AT SH3-domain kinase binding protein 1 mm
MOUSE430_2:1456261_AT SH3-domain kinase binding protein 1 mm
MOE430B:1446562_AT SH3-domain kinase binding protein 1 (Sh3kbp1), mRNA mm
MOUSE430_2:1446562_AT SH3-domain kinase binding protein 1 (Sh3kbp1), mRNA mm
MU19KSUBA:TC20786_AT SH3-domain kinase binding protein 1 (Sh3kbp1), mRNA mm
MU19KSUBC:TC37439_AT SH3-domain kinase binding protein 1 (Sh3kbp1), mRNA mm
MU19KSUBC:TC37439_G_AT SH3-domain kinase binding protein 1 (Sh3kbp1), mRNA mm
RG-U34A:U90261UTR#1_AT SH3-domain kinase binding protein 1 rn
RG-U34A:U90261UTR#1_G_AT SH3-domain kinase binding protein 1 rn
RG-U34A:RC_AA875172_AT SH3-domain kinase binding protein 1 rn
RG-U34C:RC_AI179025_AT SH3-domain kinase binding protein 1 rn
RAE230A:1370419_A_AT SH3-domain kinase binding protein 1 rn
RAT230_2:1370419_A_AT SH3-domain kinase binding protein 1 rn
RAE230A:1387957_A_AT SH3-domain kinase binding protein 1 rn
RAT230_2:1387957_A_AT SH3-domain kinase binding protein 1 rn
Protein Similarities
Method ID Description E-Value
blast NP_491143 Y44E3A.4 [Caenorhabditis elegans] gb|AAT81179.1| Hypothetical protein Y44E3A.4 [Caenorhabditis elegans] 0.0
blast T33845 hypothetical protein Y44E3A.5 - Caenorhabditis elegans 1.0E-114
blast T33845 hypothetical protein Y44E3A.5 - Caenorhabditis elegans 1.0E-113
blast CAE68985 Hypothetical protein CBG14969 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 6.8E-18
Pfam IPR001452 EMBL-EBI SH3 2.8E-12
Pfam IPR001452 EMBL-EBI SH3 6.8E-18
Pfam IPR001452 EMBL-EBI SH3 2.8E-12
Pfam IPR001452 EMBL-EBI SH3 6.8E-18
Pfam IPR001452 EMBL-EBI SH3 2.8E-12
Sequence
Target Sequence 
>C. ELEGANS:186045_AT
ttgctccagcggctagtgcatcaacttcggcgggctcagcagctcgaactccggcaaaat
cgattggaagtgaagttgtgatgagaagcgagccgaaagctattgatagaactccgtcga
cgataatctcggacccggctccagtgctcaaagccttggaaaccaaattcagcagcacat
ttgcgagctctgcagcctcggcgagcacagacgcagaaactacgaaaacgaaagaaatgg
ctcgcgtgaaatttgtctacaatccccaacacgatgatgagctggctcttaaggagattg
atatgctgattaatattacaaacaagaactgcggtgacgctggatggtttgaaggtgaac
tgcacggaaagaagggcttatttccggataattttgtcgaattggttcaagtcccactgg
gaacggaatccggtgccagacatgggtcgatttcacgtcaggcgacattgacgtttgtct
ctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCCAGCGGCTAGTGCATCAAC 151 703 356 Antisense
GCAGCTCGAACTCCGGCAAAATCGA 34 315 394 Antisense
CCGTCGACGATAATCTCGGACCCGG 441 261 469 Antisense
GGCTCCAGTGCTCAAAGCCTTGGAA 10 541 492 Antisense
GCAGCACATTTGCGAGCTCTGCAGC 604 313 527 Antisense
ATGGCTCGCGTGAAATTTGTCTACA 572 53 592 Antisense
GTCGAATTGGTTCAAGTCCCACTGG 514 471 751 Antisense
GTCCCACTGGGAACGGAATCCGGTG 236 37 766 Antisense
AATCCGGTGCCAGACATGGGTCGAT 87 167 782 Antisense
ACATGGGTCGATTTCACGTCAGGCG 544 105 795 Antisense
GGCGACATTGACGTTTGTCTCTCAC 44 543 816 Antisense
Sequence Source Affymetrix Proprietary Database