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[186043_at]

Description F20A1.10 /REP_DB=WormBase Gene ID /WP=CE07100 /TR=Q19616 /GB=AAA96132.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 49      6grp_total > 77      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28566
1 2 3 4 range
A 4071.6
(-2.7)
P 		2634.7
(-3)
P 		2529
(-3)
P 		30811.4
(3)
P 		28282
B 4599.7
(-2.5)
P 		2654.8
(-3)
P 		3057
(-2.9)
P 		25453.9
(3)
P 		22799
C 3710.2
(-2.7)
P 		2253.1
(-3)
P 		2245.3
(-3)
P 		29391.9
(3)
P 		27147
avr 4127.2
(-2.6) 		2514.2
(-3) 		2610.4
(-3) 		28552.4
(3) 		26038

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8065
1 2 3 4 5 6 range
A 3052.1
(-3)
P 		3193.4
(-2.8)
P 		3560.3
(-2.3)
P 		4143.5
(-1.5)
P 		4437.7
(-1.1)
P 		7493.2
(3)
P 		4441
B 3691
(-2.6)
P 		3526.1
(-2.7)
P 		3246.9
(-3)
P 		3910.1
(-2.3)
P 		5366.6
(-0.9)
P 		9354.1
(3)
P 		6107
C 3191.4
(-2.8)
P 		3299.7
(-2.7)
P 		2953.3
(-3)
P 		3945.6
(-2.3)
P 		4862.5
(-1.6)
P 		11018.4
(3)
P 		8065
avr 3311.5
(-2.9) 		3339.7
(-2.9) 		3253.5
(-3) 		3999.7
(-2.3) 		4888.9
(-1.4) 		9288.6
(3) 		6035
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4852
1 2 3 4 range
A 1482.5
(-1.6)
P 		571.9
(-3)
P 		661.1
(-2.9)
P 		4510.2
(3)
P 		3938
B 1466.8
(-2)
P 		655.7
(-3)
P 		708.4
(-2.9)
P 		5424.2
(3)
P 		4769
C 1228.2
(-2.2)
P 		647.8
(-3)
P 		782.6
(-2.8)
P 		4955.9
(3)
P 		4308
avr 1392.5
(-1.9) 		625.1
(-3) 		717.4
(-2.9) 		4963.4
(3) 		4338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3126
1 2 3 4 5 6 range
A 562.6
(-3)
P 		1135.7
(-0.3)
P 		775.4
(-2)
P 		1050.9
(-0.7)
P 		1339.1
(0.7)
P 		1824.4
(3)
P 		1262
B 1284.3
(-1.9)
P 		1173.7
(-2.1)
P 		788.4
(-3)
P 		1035.7
(-2.5)
P 		2180.4
(0.1)
P 		3488.1
(3)
P 		2700
C 1182.9
(-2.1)
P 		1006.8
(-2.5)
P 		751.7
(-3)
P 		793.5
(-2.9)
P 		1573.4
(-1.3)
P 		3688.5
(3)
P 		2937
avr 1009.9
(-2.4) 		1105.4
(-2.1) 		771.8
(-3) 		960
(-2.5) 		1697.6
(-0.5) 		3000.3
(3) 		2229
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12170
Sequence Type Exemplar sequence
Representative Public ID F20A1.10 NCBI
Target Description F20A1.10 /REP_DB=WormBase Gene ID /WP=CE07100 /TR=Q19616 /GB=AAA96132.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072387 NCBI Caenorhabditis elegans F20A1.10 (F20A1.10) mRNA, complete cds. 11/11 None
SNAP00000026807 ENSEMBL cdna:SNAP chromosome:CEL140:V:7055391:7055790:-1 11/11 None
GENEFINDER00000026812 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7055391:7055790:-1 11/11 None
F20A1.10.1 ENSEMBL cdna:known chromosome:CEL140:V:7055308:7055795:-1 gene:F20A1.10 11/11 None
F20A1.10.2 ENSEMBL cdna:known chromosome:CEL140:V:7055308:7055793:-1 gene:F20A1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7055391-7055791(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20A1.10
Entrez Gene 184707 Entrez gene
SwissProt Q19616 EMBL-EBI
WormBase CE07100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504788 F20A1.10 [Caenorhabditis elegans] gb|AAA96132.1| Hypothetical protein F20A1.10 [Caenorhabditis elegans] 1.0E-42
blast CAE71992 Hypothetical protein CBG19068 [Caenorhabditis briggsae] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:186043_AT
cagtaccaccaagtgccgaggaggtgaaagctcaacttgtcgccgctgggctctcggaga
cttctgccgcaggaatcgtcgaggttgccgagaagtacaagactcaactcgaagctctca
aggataacaaggacgataaggaagcaataaagaaggttttcgaggagatcaagactgaca
cggatgcctacatcaagactcaaccagaagctgatcagaaagcttatgccacctatatcg
agtctaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTACCACCAAGTGCCGAGGAGGT 85 205 71 Antisense
CGAGGAGGTGAAAGCTCAACTTGTC 69 251 87 Antisense
TCTCGGAGACTTCTGCCGCAGGAAT 582 609 122 Antisense
GCCGCAGGAATCGTCGAGGTTGCCG 559 285 136 Antisense
GAGGTTGCCGAGAAGTACAAGACTC 41 403 151 Antisense
GACTCAACTCGAAGCTCTCAAGGAT 6 375 171 Antisense
GGTTTTCGAGGAGATCAAGACTGAC 364 505 225 Antisense
CAAGACTGACACGGATGCCTACATC 360 185 240 Antisense
ATGCCTACATCAAGACTCAACCAGA 208 41 254 Antisense
GATCAGAAAGCTTATGCCACCTATA 251 421 283 Antisense
TATGCCACCTATATCGAGTCTAAGA 348 657 295 Antisense
Sequence Source Affymetrix Proprietary Database