[Home] | [Total List]

[186040_s_at]

Description T13A10.2 /REP_DB=WormBase Gene ID /WP=CE07484 /TR=Q22441 /GB=AAB38120.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 30.7
(-1.9)
A 		18.6
(-2.8)
A 		16
(-3)
A 		94.9
(3)
A 		79
B 48.9
(3)
A 		24
(-1)
A 		25.4
(-0.8)
A 		12
(-3)
A 		37
C 32.5
(-0.8)
A 		12.8
(-3)
A 		12.7
(-3)
A 		67.8
(3)
A 		55
avr 37.4
(-0.1) 		18.5
(-2.9) 		18
(-3) 		58.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 44.4
(-0)
A 		44.7
(0.1)
A 		37.4
(-3)
A 		51.5
(3)
A 		49.4
(2.1)
A 		39.5
(-2.1)
A 		14
B 42.4
(3)
A 		32.2
(1.4)
A 		11.2
(-2)
A 		5.1
(-3)
A 		14.9
(-1.4)
A 		5.9
(-2.9)
A 		37
C 79.6
(3)
A 		19.3
(-2)
A 		29.1
(-1.2)
A 		72.4
(2.4)
A 		13.2
(-2.5)
A 		6.7
(-3)
A 		73
avr 55.5
(3) 		32.1
(-0.7) 		25.9
(-1.7) 		43
(1) 		25.8
(-1.7) 		17.4
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.2
(1.4)
A 		4
(-3)
A 		4.2
(-2.9)
A 		13.9
(3)
A 		10
B 15.6
(3)
A 		5.9
(-1.5)
A 		5.9
(-1.5)
A 		2.6
(-3)
A 		13
C 10.8
(2.5)
A 		3.7
(-3)
A 		4.4
(-2.5)
A 		11.4
(3)
A 		8
avr 12.5
(3) 		4.5
(-3) 		4.8
(-2.8) 		9.3
(0.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 8.2
(-2.9)
A 		15.9
(3)
A 		8.1
(-3)
A 		13.1
(0.8)
A 		14.9
(2.2)
A 		9.6
(-1.8)
A 		8
B 14.8
(3)
A 		10.7
(1.2)
A 		2.7
(-2.4)
A 		1.3
(-3)
A 		6.1
(-0.9)
A 		2.2
(-2.6)
A 		14
C 29.5
(3)
A 		5.9
(-2.2)
A 		7.4
(-1.9)
A 		14.5
(-0.3)
A 		4.3
(-2.6)
A 		2.3
(-3)
A 		27
avr 17.5
(3) 		10.8
(-0.1) 		6.1
(-2.3) 		9.6
(-0.7) 		8.4
(-1.3) 		4.7
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186040_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11211
Sequence Type Exemplar sequence
Representative Public ID T13A10.2 NCBI
Target Description T13A10.2 /REP_DB=WormBase Gene ID /WP=CE07484 /TR=Q22441 /GB=AAB38120.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068544(11), NM_075869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068544 NCBI Caenorhabditis elegans T13A10.2 (T13A10.2) mRNA, complete cds. 11/11 None
NM_075869 NCBI Caenorhabditis elegans F19G12.1 (F19G12.1) mRNA, complete cds. 11/11 None
SNAP00000039088 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6253284:6253769:1 11/11 None
GENEFINDER00000039105 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6253284:6253769:1 11/11 None
SNAP00000018687 ENSEMBL cdna:SNAP chromosome:CEL140:X:1431002:1431481:1 11/11 None
GENEFINDER00000018689 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1431002:1431481:1 11/11 None
T13A10.2 ENSEMBL cdna:known chromosome:CEL140:IV:6253284:6253769:1 gene:T13A10.2 11/11 None
F19G12.1 ENSEMBL cdna:known chromosome:CEL140:X:1431002:1431481:1 gene:F19G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6253289-6253775(+) 100.0 100.0
chrX:1431001-1431481(+) 97.94 97.94
Public Domain and Genome References
Gene Title

Ensembl T13A10.2
F19G12.1
Entrez Gene 184691 Entrez gene
188459 Entrez gene
SwissProt Q19600 EMBL-EBI
Q22441 EMBL-EBI
WormBase CE07084 Wormbase
CE07484 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500945 T13A10.2 [Caenorhabditis elegans] gb|AAB38120.1| Hypothetical protein T13A10.2 [Caenorhabditis elegans] 8.0E-91
blast AAG24064 Hypothetical protein F19G12.1 [Caenorhabditis elegans] ref|NP_508270.1| F19G12.1 [Caenorhabditis elegans] 6.0E-89
blast AAG24064 Hypothetical protein F19G12.1 [Caenorhabditis elegans] ref|NP_508270.1| F19G12.1 [Caenorhabditis elegans] 7.0E-85
blast NP_500945 T13A10.2 [Caenorhabditis elegans] gb|AAB38120.1| Hypothetical protein T13A10.2 [Caenorhabditis elegans] 7.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-5
Pfam IPR001841 EMBL-EBI Zn-finger, RING 7.3E-6
Sequence
Target Sequence 
>C. ELEGANS:186040_S_AT
gggtgatgacgaccgttgcaagacgggaattcttatccggtgtcttggcgatcttcaaga
aatggaggacggctaccttcgcaaaatggaagtcatggagaaagaacaggtggctgccga
aaaacgacttgttgaatgcagggaagacgttgcaaagttacgggcagaaaacgcacagtt
ggcgaccgatatcgacaatctcaagactgcaaccgaaaacaccggacgcctcaatgcaga
aattgcccagttacgaacggaactgtccgccgtgccccgcccttgttgcgcggtttgtca
cgattcatacgcctcccgcggtccaaaaaaacccaaggtttgttcctgtctgcacactta
ttgtggcgcgtgcattagggaaatttcgagccgccacaatggtgaaatgaaatgccccga
atgcgttgcggacgtccgcatactgggaacaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGATGACGACCGTTGCAAGACG 643 497 15 Antisense
GGGAATTCTTATCCGGTGTCTTGGC 571 493 39 Antisense
AAATGGAGGACGGCTACCTTCGCAA 605 115 74 Antisense
GGTGGCTGCCGAAAAACGACTTGTT 200 499 123 Antisense
GTTGGCGACCGATATCGACAATCTC 575 431 192 Antisense
CGACAATCTCAAGACTGCAACCGAA 590 251 207 Antisense
TGCAGAAATTGCCCAGTTACGAACG 631 571 249 Antisense
TTACGAACGGAACTGTCCGCCGTGC 90 683 265 Antisense
AATTTCGAGCCGCCACAATGGTGAA 454 173 396 Antisense
GAAATGCCCCGAATGCGTTGCGGAC 622 361 423 Antisense
GGACGTCCGCATACTGGGAACAAAC 198 523 444 Antisense
Sequence Source Affymetrix Proprietary Database