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[186039_at] 7TM chemoreceptor, srw family

Description R08F11.5 /REP_DB=WormBase Gene ID /WP=CE12588 /TR=O01888 /GB=AAB54247.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 18      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.7
(-3)
A 		10.8
(0.8)
A 		2.7
(-3)
A 		15.6
(3)
A 		13
B 3.9
(3)
A 		3.7
(2.2)
A 		2.4
(-3)
A 		2.9
(-1)
A 		2
C 2.9
(-3)
A 		6
(-1.6)
A 		5.5
(-1.9)
A 		16.6
(3)
A 		14
avr 3.2
(-3) 		6.8
(-0.5) 		3.5
(-2.8) 		11.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4
(-1.7)
A 		2.8
(-2.9)
A 		8.8
(3)
A 		4.4
(-1.3)
A 		2.7
(-3)
A 		3.4
(-2.3)
A 		6
B 7.6
(3)
A 		4.7
(-0.3)
A 		3
(-2.2)
A 		3.5
(-1.6)
A 		4.3
(-0.7)
A 		2.3
(-3)
A 		5
C 7.6
(0.6)
A 		11.1
(3)
A 		2.5
(-3)
A 		2.8
(-2.8)
A 		3.5
(-2.3)
A 		3.6
(-2.2)
A 		9
avr 6.4
(3) 		6.2
(2.6) 		4.8
(0.1) 		3.6
(-2.1) 		3.5
(-2.3) 		3.1
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(-1.9)
A 		2.3
(3)
A 		0.7
(-3)
A 		2.3
(3)
A 		2
B 1.2
(3)
A 		0.9
(0.4)
A 		0.5
(-3)
A 		0.6
(-2.1)
A 		1
C 1
(-3)
A 		1.7
(-0.7)
A 		1.9
(0)
A 		2.8
(3)
A 		2
avr 1.1
(-2.3) 		1.6
(1) 		1
(-3) 		1.9
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1
(-1.5)
A 		1.9
(3)
A 		1.1
(-1)
A 		0.8
(-2.5)
A 		0.8
(-2.5)
A 		1
B 2.6
(3)
A 		1.6
(-0.2)
A 		0.7
(-3)
A 		0.9
(-2.4)
A 		1.8
(0.5)
A 		0.9
(-2.4)
A 		2
C 2.8
(1.7)
A 		3.4
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.1
(-1.9)
A 		1.2
(-1.7)
A 		3
avr 2
(3) 		2
(3) 		1.1
(-1.9) 		0.9
(-3) 		1.2
(-1.4) 		1
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14863
Sequence Type Exemplar sequence
Representative Public ID R08F11.5 NCBI
Target Description R08F11.5 /REP_DB=WormBase Gene ID /WP=CE12588 /TR=O01888 /GB=AAB54247.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071652 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-7) (srw-7) mRNA, complete cds. 11/11 None
SNAP00000031723 ENSEMBL cdna:SNAP chromosome:CEL140:V:3804572:3807566:1 11/11 None
GENEFINDER00000031727 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3806075:3807566:1 11/11 None
R08F11.5 ENSEMBL cdna:known chromosome:CEL140:V:3806075:3807566:1 gene:R08F11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3806074-3807566(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-7
Ensembl R08F11.5
Entrez Gene 187706 Entrez gene
SwissProt O01888 EMBL-EBI
WormBase CE12588 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54247 Serpentine receptor, class w protein 7 [Caenorhabditis elegans] ref|NP_504053.1| Serpentine Receptor, class W family member (srw-7) [Caenorhabditis elegans] 0.0
blast AAF39875 Serpentine receptor, class w protein 6 [Caenorhabditis elegans] ref|NP_504054.1| Serpentine Receptor, class W family member (srw-6) [Caenorhabditis elegans] 6.0E-69
blast CAE58134 Hypothetical protein CBG01222 [Caenorhabditis briggsae] 3.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504053.1 7 47-69,81-103,144-166,173-195,235-254,275-297,317-336
R08F11.5 7 47-69,81-103,144-166,173-195,235-254,275-297,317-336
SNAP00000031723 7 72-94,106-128,169-191,198-220,260-279,300-322,342-361
GENEFINDER00000031727 7 47-69,81-103,144-166,173-195,235-254,275-297,317-336
Sequence
Target Sequence 
>C. ELEGANS:186039_AT
aattgcgattgcgagtacggcctggagctcatttcaattccttcaaaccagtattgaaaa
agtaaccaaatattgtacctataaccgaccaagctatgttccgtacttgctcttgaataa
tgaaaaactggtggataaattcaattatgctgatagctgcatttcattagtggtcagtac
actgtatgtttttgttgcgcttgctctcgtggtggagctccaacggacaaaaaagcgaag
gaagaacttgagaagcgaaaaacccaataatacgacaaaattggttgtagtgatggctgc
aacagtattcgtttccgaatccttttatggactccttcgttacattgcatttcatacgtt
tgccggttatgaagagcaacccttgattcaacaatttgccgacaggatgcaactgcttgt
catggcgagctctattgcacactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCGATTGCGAGTACGGCCTGG 702 167 555 Antisense
GCCTGGAGCTCATTTCAATTCCTTC 607 283 574 Antisense
GTACCTATAACCGACCAAGCTATGT 649 457 629 Antisense
AAGCTATGTTCCGTACTTGCTCTTG 169 151 645 Antisense
ACTGTATGTTTTTGTTGCGCTTGCT 434 97 735 Antisense
GCTCTCGTGGTGGAGCTCCAACGGA 214 297 757 Antisense
GGCTGCAACAGTATTCGTTTCCGAA 45 541 849 Antisense
GAATCCTTTTATGGACTCCTTCGTT 232 329 871 Antisense
GACTCCTTCGTTACATTGCATTTCA 145 375 884 Antisense
GGATGCAACTGCTTGTCATGGCGAG 136 511 959 Antisense
TCATGGCGAGCTCTATTGCACACTG 690 621 974 Antisense
Sequence Source Affymetrix Proprietary Database