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[186038_at]

Description Y23B4A.1 /REP_DB=WormBase Gene ID /WP=CE24190 /TR=Q9N564 /GB=AAF60453.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 14      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 54.9
(2.8)
P 		12.9
(-1.9)
A 		3.4
(-3)
A 		56.5
(3)
A 		53
B 44.3
(-0.7)
P 		38.9
(-3)
A 		52.7
(3)
P 		42.4
(-1.5)
A 		14
C 52.1
(-0.3)
P 		24.3
(-2.6)
A 		18.9
(-3)
P 		92.6
(3)
P 		74
avr 50.4
(0.9) 		25.4
(-2.9) 		25
(-3) 		63.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 46.9
(3)
A 		27.1
(0.3)
P 		27.4
(0.4)
A 		17.7
(-0.9)
A 		39.8
(2)
A 		2.3
(-3)
A 		45
B 5
(-3)
A 		25.9
(1.1)
A 		33
(2.5)
A 		35.6
(3)
P 		5.3
(-2.9)
A 		20.9
(0.1)
A 		31
C 17.2
(-1.4)
A 		32.7
(3)
A 		29.7
(2.2)
M 		28.9
(1.9)
A 		23
(0.3)
A 		11.5
(-3)
A 		21
avr 23
(0.7) 		28.6
(2.5) 		30
(3) 		27.4
(2.2) 		22.7
(0.6) 		11.6
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20
(3)
P 		2.8
(-2.4)
A 		0.9
(-3)
A 		8.3
(-0.7)
A 		19
B 14.1
(3)
P 		9.6
(-2.3)
A 		12.2
(0.8)
P 		9
(-3)
A 		5
C 17.3
(3)
P 		7
(-2.8)
A 		6.6
(-3)
P 		15.6
(2)
P 		11
avr 17.1
(3) 		6.5
(-3) 		6.6
(-2.9) 		11
(-0.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8.6
(1.2)
A 		9.6
(1.7)
P 		6
(-0.2)
A 		4.5
(-0.9)
A 		12
(3)
A 		0.6
(-3)
A 		11
B 1.8
(-3)
A 		8.6
(2.4)
A 		8
(1.9)
A 		9.4
(3)
P 		2.1
(-2.8)
A 		7.8
(1.7)
A 		8
C 6.4
(-0.5)
A 		10
(3)
A 		7.6
(0.7)
M 		5.8
(-1.1)
A 		7.4
(0.5)
A 		3.8
(-3)
A 		6
avr 5.6
(-1.3) 		9.4
(3) 		7.2
(0.5) 		6.6
(-0.2) 		7.2
(0.5) 		4.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17236
Sequence Type Exemplar sequence
Representative Public ID Y23B4A.1 NCBI
Target Description Y23B4A.1 /REP_DB=WormBase Gene ID /WP=CE24190 /TR=Q9N564 /GB=AAF60453.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076589 NCBI Caenorhabditis elegans Y23B4A.1 (Y23B4A.1) mRNA, complete cds. 11/11 None
Y23B4A.1 ENSEMBL cdna:known chromosome:CEL140:X:5916991:5917562:-1 gene:Y23B4A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011335 5/11 Cross Hyb Matching Probes None
SNAP00000011333 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5916990-5917562(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23B4A.1
Entrez Gene 189520 Entrez gene
SwissProt Q9N564 EMBL-EBI
WormBase CE24190 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60453 Hypothetical protein Y23B4A.1 [Caenorhabditis elegans] ref|NP_508990.1| Y23B4A.1 [Caenorhabditis elegans] 5.0E-57
Sequence
Target Sequence 
>C. ELEGANS:186038_AT
ctacgtgtatgatgacttttttccaaatatcatttttgctaacggctgcggaaataatgt
gatccgcccacgacaacctcgagacccagccgcattcaagcatatatttctattttcttt
ttgcatattagtgtcattttcctatatacgacagacgccaagcagcatgcatgatcgacg
caataatggaccagatgcagaattgtcacgtaagaatattcttaccgtcgactataaaat
ccaactttcccggcgcgtcgtagtggctcgtcgcaggtggttcagggagttctttttgga
ccttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACGTGTATGATGACTTTTTTCCA 301 225 51 Antisense
TATCATTTTTGCTAACGGCTGCGGA 511 657 78 Antisense
AAATAATGTGATCCGCCCACGACAA 616 115 102 Antisense
ACCCAGCCGCATTCAAGCATATATT 320 91 134 Antisense
CATTTTCCTATATACGACAGACGCC 145 215 185 Antisense
ACGACAGACGCCAAGCAGCATGCAT 105 91 198 Antisense
AGCAGCATGCATGATCGACGCAATA 299 45 211 Antisense
AAGAATATTCTTACCGTCGACTATA 431 151 262 Antisense
TCGACTATAAAATCCAACTTTCCCG 601 599 278 Antisense
GCTCGTCGCAGGTGGTTCAGGGAGT 296 299 316 Antisense
TCAGGGAGTTCTTTTTGGACCTTGA 628 615 332 Antisense
Sequence Source Affymetrix Proprietary Database