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[186037_s_at]

Description F23H11.7 /REP_DB=WormBase Gene ID /WP=CE27998 /TR=O01920 /GB=AAC71135.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 899
1 2 3 4 range
A 1303.5
(3)
P 		548
(-2.1)
P 		423.8
(-2.9)
P 		414.4
(-3)
P 		889
B 1186
(3)
P 		603.3
(-1.5)
P 		410.9
(-3)
P 		484.8
(-2.4)
P 		775
C 1156.7
(3)
P 		576.5
(-1.6)
P 		491.3
(-2.3)
P 		404.8
(-3)
P 		752
avr 1215.4
(3) 		575.9
(-1.9) 		442
(-2.9) 		434.7
(-3) 		781

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 818
1 2 3 4 5 6 range
A 1095.3
(3)
P 		789.1
(0.8)
P 		812.1
(0.9)
P 		830.4
(1.1)
P 		497.1
(-1.4)
P 		277.7
(-3)
P 		818
B 914.4
(3)
P 		823.2
(2.1)
P 		819.7
(2.1)
P 		796.7
(1.8)
P 		483
(-1.3)
P 		311.7
(-3)
P 		603
C 847
(3)
P 		841.7
(2.9)
P 		813
(2.6)
P 		843.7
(3)
P 		403.7
(-1.8)
P 		298.5
(-3)
P 		549
avr 952.2
(3) 		818
(1.8) 		814.9
(1.7) 		823.6
(1.8) 		461.3
(-1.5) 		296
(-3) 		656
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 414
1 2 3 4 range
A 474.6
(3)
P 		119
(-2.2)
P 		110.8
(-2.3)
P 		60.7
(-3)
P 		414
B 378.2
(3)
P 		149
(-1.9)
P 		95.2
(-3)
P 		103.3
(-2.8)
P 		283
C 382.9
(3)
P 		165.7
(-1.1)
P 		171.2
(-1)
P 		68.3
(-3)
P 		315
avr 411.9
(3) 		144.6
(-1.8) 		125.7
(-2.1) 		77.4
(-3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 201.9
(0.8)
P 		280.7
(3)
P 		176.9
(0.1)
P 		210.6
(1)
P 		150
(-0.7)
P 		67.6
(-3)
P 		213
B 318.2
(3)
P 		274
(1.7)
P 		199
(-0.5)
P 		211
(-0.2)
P 		196.2
(-0.6)
P 		116.2
(-3)
P 		202
C 313.9
(3)
P 		256.8
(1.4)
P 		206.9
(0)
P 		169.7
(-1)
P 		130.6
(-2.1)
P 		99.9
(-3)
P 		214
avr 278
(3) 		270.5
(2.8) 		194.3
(0.3) 		197.1
(0.4) 		158.9
(-0.9) 		94.6
(-3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186037_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8298
Sequence Type Exemplar sequence
Representative Public ID F23H11.7 NCBI
Target Description F23H11.7 /REP_DB=WormBase Gene ID /WP=CE27998 /TR=O01920 /GB=AAC71135.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064893 NCBI Caenorhabditis elegans F23H11.7 (F23H11.7) mRNA, complete cds. 11/11 None
GENEFINDER00000010303 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:917121:918906:-1 11/11 None
F23H11.7 ENSEMBL cdna:known chromosome:CEL140:III:917118:919398:-1 gene:F23H11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:917120-918906(-) 99.56 100.0
Public Domain and Genome References
Gene Title
Ensembl F23H11.7
Entrez Gene 175256 Entrez gene
SwissProt O01920 EMBL-EBI
WormBase CE27998 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71135 Hypothetical protein F23H11.7 [Caenorhabditis elegans] ref|NP_497294.1| F23H11.7 [Caenorhabditis elegans] 1.0E-162
blast AAC71135 Hypothetical protein F23H11.7 [Caenorhabditis elegans] ref|NP_497294.1| F23H11.7 [Caenorhabditis elegans] 1.0E-148
blast CAE69137 Hypothetical protein CBG15167 [Caenorhabditis briggsae] 1.0E-96
blast CAE69137 Hypothetical protein CBG15167 [Caenorhabditis briggsae] 3.0E-92
Sequence
Target Sequence 
>C. ELEGANS:186037_S_AT
cttcccaccgattcacgttggagatgaagtagttgtgttgagctttcctagttttctaac
tggaacaattgaatcgatttcactttcagctcaagcaaatcctggttatttacacattgt
tacagtcattgatcctcttttcaaaccctttgctgttttgttaaactataacgttatcat
cggccagccaagtcaaacggtcaatttaacgtcatcaagttttgtagcttacttggacaa
tagcacttcaatgccgaaacaaaactcataccgatccgagtacctggttcttgtatacta
ctccgcttcacaaattattctgaatgggtctactccaaaagataagattttgggttcatc
ttgttctgacaccaaatgcctattcaccaattcggcactttcatcaaaactcagtcaacc
aatggcaggaacagttttttatattactacaaaaaacaccgtattcacaacttcagagga
tgtcgctcatagctcggctacctcccatttattgattact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCCACCGATTCACGTTGGAGAT 617 217 360 Antisense
GTGTTGAGCTTTCCTAGTTTTCTAA 268 483 394 Antisense
ATCGATTTCACTTTCAGCTCAAGCA 576 35 432 Antisense
TCGGCCAGCCAAGTCAAACGGTCAA 160 607 539 Antisense
CCGATCCGAGTACCTGGTTCTTGTA 6 265 630 Antisense
TACTACTCCGCTTCACAAATTATTC 645 645 655 Antisense
TTGGGTTCATCTTGTTCTGACACCA 210 709 709 Antisense
TCTGACACCAAATGCCTATTCACCA 268 607 724 Antisense
TATTCACCAATTCGGCACTTTCATC 346 661 740 Antisense
AACACCGTATTCACAACTTCAGAGG 652 135 814 Antisense
GGCTACCTCCCATTTATTGATTACT 119 539 855 Antisense
Sequence Source Affymetrix Proprietary Database