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[186035_at]

Description T06A10.2 /REP_DB=WormBase Gene ID /WP=CE25981 /TR=Q9TZ46 /GB=AAK39271.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 24.8
(-1.7)
A 		41.2
(-0.6)
A 		5.7
(-3)
A 		94.2
(3)
A 		89
B 48
(-0)
A 		35.2
(-1.6)
A 		24.3
(-3)
A 		71.8
(3)
A 		48
C 46.2
(0.5)
A 		6.7
(-2.7)
A 		2.9
(-3)
A 		76.1
(3)
A 		73
avr 39.7
(-0.5) 		27.7
(-1.6) 		11
(-3) 		80.7
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 37.4
(2.9)
A 		23.4
(0.5)
A 		3.5
(-3)
A 		5.5
(-2.7)
A 		38.1
(3)
P 		15.6
(-0.9)
A 		35
B 28.1
(1.5)
A 		3.1
(-3)
A 		19.9
(0.1)
A 		19.9
(0.1)
A 		36.1
(3)
A 		33.1
(2.5)
A 		33
C 1.3
(-3)
A 		27.9
(0.9)
A 		3.4
(-2.7)
A 		2
(-2.9)
A 		42
(3)
A 		3.5
(-2.7)
A 		41
avr 22.3
(-0.3) 		18.1
(-1.1) 		8.9
(-3) 		9.1
(-3) 		38.7
(3) 		17.4
(-1.3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9
(0.7)
A 		8.9
(0.6)
A 		1.5
(-3)
A 		13.8
(3)
A 		12
B 15.3
(3)
A 		8.7
(-1.1)
A 		5.6
(-3)
A 		15.3
(3)
A 		10
C 15.3
(3)
A 		1.9
(-2.6)
A 		1
(-3)
A 		12.8
(2)
A 		14
avr 13.2
(2.6) 		6.5
(-1) 		2.7
(-3) 		14
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.9
(0.4)
A 		8.3
(1.2)
A 		0.8
(-3)
A 		1.4
(-2.7)
A 		11.5
(3)
P 		3.8
(-1.3)
A 		11
B 9.8
(0.9)
A 		1
(-3)
A 		4.8
(-1.3)
A 		5.3
(-1.1)
A 		14.7
(3)
A 		12.3
(1.9)
A 		14
C 0.5
(-3)
A 		8.5
(0.7)
A 		0.9
(-2.8)
A 		0.4
(-3)
A 		13.6
(3)
A 		1.2
(-2.6)
A 		13
avr 5.7
(-1.1) 		5.9
(-1) 		2.2
(-3) 		2.4
(-2.9) 		13.3
(3) 		5.8
(-1.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9940
Sequence Type Exemplar sequence
Representative Public ID T06A10.2 NCBI
Target Description T06A10.2 /REP_DB=WormBase Gene ID /WP=CE25981 /TR=Q9TZ46 /GB=AAK39271.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070600(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070600 NCBI Caenorhabditis elegans T06A10.2 (T06A10.2) mRNA, complete cds. 9/11 A 
T06A10.2 ENSEMBL cdna:known chromosome:CEL140:IV:16895327:16896038:1 gene:T06A10.2 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010053 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024464 3/11 Cross Hyb Matching Probes None
Y37H9A.5 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16893212-16896044(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06A10.2
Entrez Gene 188158 Entrez gene
SwissProt Q965G6 EMBL-EBI
WormBase CE36609 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK73892 Hypothetical protein T06A10.2 [Caenorhabditis elegans] ref|NP_503001.3| T06A10.2 [Caenorhabditis elegans] 2.0E-64
blast T33652 hypothetical protein T06A10.2 - Caenorhabditis elegans 2.0E-49
blast CAB76744 Hypothetical protein Y47H9C.14 [Caenorhabditis elegans] ref|NP_493017.1| Y47H9C.14 [Caenorhabditis elegans] 8.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR002673 EMBL-EBI Ribosomal L29e protein 1.6E-10
Sequence
Target Sequence 
>C. ELEGANS:186035_AT
aaccggcaactcgatgctttactgggacacacggggagagagagagaaagggaccggaga
cgtgatcgataccgactacttacaccctacacggcctccacatggtgcatcgaaccggtc
aaggatcaaggaaggagttaaagataaattttacgaatttaattgtgtcattatgtttaa
ttcgtattttacttcatacaatcgacccaattttttgttttttccgcttaattttcagaa
ttatcagtttcgcccgtttccgggtctcagtgagcacgggcagatcggagagttcgagat
cgtcgagagagagcaacacgatgcatggaagtcgaagaatcgcaccaatcacaaccagaa
caacaaggctcaccgtattggaatcacgaagccaaagatcttcctctccatagaaggaag
tcgacgccaagttcatcaagaacctccgcttcgaggttctcgacttccacaatgtaaaat
tccaagactacaacgttctgaccgatcaggagctgagagaaggcgtcaaaatcttcagct
aatggccaacaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGGCAACTCGATGCTTTACTGG 456 145 90 Antisense
ATCGAACCGGTCAAGGATCAAGGAA 334 15 198 Antisense
ATGTTTAATTCGTATTTTACTTCAT 671 45 262 Antisense
TTTACTTCATACAATCGACCCAATT 511 673 277 Antisense
TCAGAATTATCAGTTTCGCCCGTTT 542 623 324 Antisense
TTTCCGGGTCTCAGTGAGCACGGGC 452 659 346 Antisense
GAGCACGGGCAGATCGGAGAGTTCG 547 389 361 Antisense
CGAGATCGTCGAGAGAGAGCAACAC 362 245 384 Antisense
GATCAGGAGCTGAGAGAAGGCGTCA 657 419 593 Antisense
GGCGTCAAAATCTTCAGCTAATGGC 647 539 611 Antisense
ATCTTCAGCTAATGGCCAACAATTC 462 31 620 Antisense
Sequence Source Affymetrix Proprietary Database