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[186034_at]

Description Y102E9.2 /REP_DB=WormBase Gene ID /WP=CE07574 /TR=Q23232 /GB=AAA93426.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 416
(0.5)
P 		480.1
(1.9)
P 		532.1
(3)
P 		256.8
(-3)
P 		275
B 484.2
(0.8)
P 		481.4
(0.7)
P 		584.6
(3)
P 		314.2
(-3)
P 		270
C 386.9
(-3)
P 		517.4
(0.6)
P 		602.4
(3)
P 		450
(-1.2)
P 		216
avr 429
(-0.7) 		493
(0.9) 		573
(3) 		340.3
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 440.3
(-1.9)
P 		397.4
(-2.5)
P 		359.1
(-3)
P 		425.7
(-2.1)
P 		566.9
(-0.1)
P 		784.3
(3)
P 		425
B 381.5
(-1.6)
P 		361.8
(-1.8)
P 		268.3
(-3)
P 		402.2
(-1.3)
P 		549.6
(0.5)
P 		750.4
(3)
P 		482
C 458.3
(-1.2)
P 		356.8
(-3)
P 		419.3
(-1.9)
P 		475.6
(-0.9)
P 		454.6
(-1.3)
P 		694.5
(3)
P 		338
avr 426.7
(-1.8) 		372
(-2.6) 		348.9
(-3) 		434.5
(-1.7) 		523.7
(-0.3) 		743.1
(3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 151.5
(3)
P 		104.2
(0.5)
P 		139.1
(2.3)
P 		37.6
(-3)
P 		114
B 154.4
(3)
P 		118.9
(0.6)
P 		135.5
(1.7)
P 		66.9
(-3)
P 		88
C 128.1
(-0.7)
P 		148.8
(0.3)
P 		210
(3)
P 		75.9
(-3)
P 		134
avr 144.7
(2) 		124
(0.8) 		161.5
(3) 		60.1
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 81.2
(-2.8)
P 		141.3
(0.4)
P 		78.2
(-3)
P 		108
(-1.4)
P 		171.1
(1.9)
P 		191
(3)
P 		113
B 132.7
(-1.1)
P 		120.4
(-1.5)
P 		65.1
(-3)
P 		106.5
(-1.8)
P 		223.3
(1.4)
P 		279.8
(3)
P 		215
C 169.9
(0.3)
P 		108.9
(-2.4)
P 		106.7
(-2.5)
P 		95.7
(-3)
P 		147.1
(-0.7)
P 		232.5
(3)
P 		137
avr 127.9
(-1.2) 		123.5
(-1.4) 		83.3
(-3) 		103.4
(-2.2) 		180.5
(0.9) 		234.4
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7648
Sequence Type Exemplar sequence
Representative Public ID Y102E9.2 NCBI
Target Description Y102E9.2 /REP_DB=WormBase Gene ID /WP=CE07574 /TR=Q23232 /GB=AAA93426.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066075 NCBI Caenorhabditis elegans Y102E9.2 (Y102E9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000008394 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6725728:6727724:1 11/11 None
SNAP00000008385 ENSEMBL cdna:SNAP chromosome:CEL140:III:6725865:6727724:1 11/11 None
Y102E9.2.2 ENSEMBL cdna:known chromosome:CEL140:III:6725720:6727991:1 gene:Y102E9.2 11/11 None
Y102E9.2.1 ENSEMBL cdna:known chromosome:CEL140:III:6725722:6727991:1 gene:Y102E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6725726-6727723(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102E9.2
Entrez Gene 190860 Entrez gene
SwissProt Q23232 EMBL-EBI
WormBase CE07574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93426 Hypothetical protein Y102E9.2 [Caenorhabditis elegans] ref|NP_498476.1| Y102E9.2 [Caenorhabditis elegans] 0.0
blast CAE70113 Hypothetical protein CBG16565 [Caenorhabditis briggsae] 1.0E-159
blast CAE70113 Hypothetical protein CBG16565 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:186034_AT
cgagcgcttagatacccagcgacctctgtcattgactcattcttccttggtcacaccgag
tatgtcaaaacattggcggtgcaggataatgactcactatggagttctggaggagacaag
aacctatataactggagcatcgcaaaatgttcagctcctcgtagaacgcttgatctgtcc
cagtttgacgctcccattcgcaagatttcaatcaatttgcagcacaagaaaatcgctgtc
attttcgagaaaattgagactgtcgtgattgttgatctcaaccaagaatcattgcaaacc
acttctgtatcaatcgtgggcgaatcgcaatgtctcgatattgcttctacgaaagactac
ttcgctgtcctcggaagatctacagtacacctcatcgatctcaacaatatggaacaaaag
tttgtaccgattgatgaagaattgacgatcacactgacttctaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCGCTTAGATACCCAGCGACCT 343 247 550 Antisense
CTCTGTCATTGACTCATTCTTCCTT 447 231 573 Antisense
TCTTCCTTGGTCACACCGAGTATGT 509 615 590 Antisense
ATCGCAAAATGTTCAGCTCCTCGTA 460 37 688 Antisense
CTCGTAGAACGCTTGATCTGTCCCA 340 233 707 Antisense
GCTCCCATTCGCAAGATTTCAATCA 97 299 739 Antisense
ATCATTGCAAACCACTTCTGTATCA 703 29 837 Antisense
TACGAAAGACTACTTCGCTGTCCTC 285 649 897 Antisense
GAAGATCTACAGTACACCTCATCGA 108 339 923 Antisense
TACACCTCATCGATCTCAACAATAT 462 643 935 Antisense
TGACGATCACACTGACTTCTACCAA 702 569 992 Antisense
Sequence Source Affymetrix Proprietary Database