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[186033_at]

Description F47C12.7 /REP_DB=WormBase Gene ID /WP=CE10682 /TR=Q20533 /GB=AAC24392.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 50      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 6.4
(-1.7)
A 		4.1
(-3)
A 		14.4
(3)
A 		6
(-1.9)
A 		10
B 3.9
(-2.2)
A 		16.8
(3)
A 		11.8
(1)
A 		2
(-3)
A 		15
C 11.5
(-2)
A 		35.2
(3)
A 		12.1
(-1.8)
A 		6.5
(-3)
A 		29
avr 7.3
(-1.9) 		18.7
(3) 		12.8
(0.5) 		4.8
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 20.2
(1.2)
A 		27.7
(3)
A 		6.3
(-2.3)
A 		3.3
(-3)
A 		6.1
(-2.3)
A 		3.6
(-2.9)
A 		24
B 28.1
(3)
A 		8.3
(-1.8)
A 		4.1
(-2.8)
A 		3.2
(-3)
A 		3.5
(-2.9)
A 		3.9
(-2.8)
A 		25
C 9
(-0.4)
A 		5.1
(-2)
A 		5.7
(-1.7)
A 		17.1
(3)
A 		4.1
(-2.4)
A 		2.6
(-3)
A 		15
avr 19.1
(3) 		13.7
(0.9) 		5.4
(-2.2) 		7.9
(-1.3) 		4.6
(-2.5) 		3.4
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.3
(-0.1)
A 		0.9
(-3)
A 		3.8
(3)
A 		0.9
(-3)
A 		3
B 1.2
(-1.7)
A 		4.1
(3)
A 		2.7
(0.7)
A 		0.4
(-3)
A 		4
C 3.8
(-1.2)
A 		10.1
(3)
A 		4.2
(-0.9)
A 		1.1
(-3)
A 		9
avr 2.4
(-0.7) 		5
(3) 		3.6
(1) 		0.8
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.7
(-1.1)
A 		9.8
(3)
A 		1.4
(-2.6)
A 		0.8
(-3)
A 		1.8
(-2.3)
A 		0.9
(-2.9)
A 		9
B 9.8
(3)
A 		2.8
(-1.7)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1.4
(-2.6)
A 		1.5
(-2.5)
A 		9
C 3.3
(2.8)
A 		1.6
(-1.3)
A 		1.4
(-1.8)
A 		3.4
(3)
A 		1.3
(-2)
A 		0.9
(-3)
A 		3
avr 5.6
(3) 		4.7
(1.8) 		1.3
(-2.7) 		1.7
(-2.2) 		1.5
(-2.5) 		1.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10830
Sequence Type Exemplar sequence
Representative Public ID F47C12.7 NCBI
Target Description F47C12.7 /REP_DB=WormBase Gene ID /WP=CE10682 /TR=Q20533 /GB=AAC24392.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068055 NCBI Caenorhabditis elegans F47C12.7 (F47C12.7) mRNA, complete cds. 11/11 None
GENEFINDER00000026890 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3993878:3998613:-1 10/11 None
F47C12.7 ENSEMBL cdna:known chromosome:CEL140:IV:3993878:3995430:-1 gene:F47C12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026884 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3993883-3995436(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47C12.7
Entrez Gene 185919 Entrez gene
SwissProt Q20533 EMBL-EBI
WormBase CE10682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24392 Hypothetical protein F47C12.7 [Caenorhabditis elegans] ref|NP_500456.1| F47C12.7 [Caenorhabditis elegans] 1.0E-113
blast AAC24393 Hypothetical protein F47C12.8 [Caenorhabditis elegans] ref|NP_500457.1| F47C12.8 [Caenorhabditis elegans] 1.0E-103
blast AAC24392 Hypothetical protein F47C12.7 [Caenorhabditis elegans] ref|NP_500456.1| F47C12.7 [Caenorhabditis elegans] 7.0E-91
blast AAC24393 Hypothetical protein F47C12.8 [Caenorhabditis elegans] ref|NP_500457.1| F47C12.8 [Caenorhabditis elegans] 4.0E-22
blast AAC24391 Hypothetical protein F47C12.6 [Caenorhabditis elegans] ref|NP_500455.1| F47C12.6 [Caenorhabditis elegans] 2.0E-19
blast AAC24391 Hypothetical protein F47C12.6 [Caenorhabditis elegans] ref|NP_500455.1| F47C12.6 [Caenorhabditis elegans] 6.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 1.0E-126
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 5.3E-111
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 3.4E-115
Sequence
Target Sequence 
>C. ELEGANS:186033_AT
tcgctggtgcggtcaaatctacattatcgaggaagacagcaaactcggtaaaaacgacat
ccttaagtttgaccggttctgcgtgacaggagatgaaggcaagctccactacgtcttcaa
tccaaacggtgacttccctacgtttcactacgaatttaactgtttcctcagccatgattg
ctccactgacaataaatggtattgtcagacacgtgcaaaaccatttcaaactcttataaa
tggattcagtcatgatgtgcttcctcaaattgatttctgtgctaccgagcatcacaagaa
ctacaccttcacagtaactcctggaggagatttttcaaatgaatacgagttcgcttacgt
actcaatcacaactgcaccactgacggaaagatccgttgcttgaagccttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGGTGCGGTCAAATCTACATT 122 599 63 Antisense
TAAGTTTGACCGGTTCTGCGTGACA 135 637 126 Antisense
AGATGAAGGCAAGCTCCACTACGTC 661 67 153 Antisense
TCAATCCAAACGGTGACTTCCCTAC 56 631 179 Antisense
GAATTTAACTGTTTCCTCAGCCATG 441 325 214 Antisense
TCAGCCATGATTGCTCCACTGACAA 34 625 230 Antisense
TTCAGTCATGATGTGCTTCCTCAAA 502 687 307 Antisense
GATTTCTGTGCTACCGAGCATCACA 28 429 334 Antisense
ACTACACCTTCACAGTAACTCCTGG 297 101 362 Antisense
TACGTACTCAATCACAACTGCACCA 611 647 418 Antisense
AAGATCCGTTGCTTGAAGCCTTCCA 434 155 451 Antisense
Sequence Source Affymetrix Proprietary Database