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[186030_s_at]

Description C43E11.1 /REP_DB=WormBase Gene ID /WP=CE23592 /TR=P91156 /GB=AAB37630.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 46      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 81      6grp_total > 36      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 381.6
(3)
P 		361.6
(2.3)
P 		223.4
(-2.6)
P 		210.8
(-3)
P 		171
B 376.3
(-3)
P 		414.2
(3)
P 		392.1
(-0.5)
P 		378.5
(-2.7)
P 		38
C 502.6
(3)
P 		345.4
(-1.3)
P 		384.8
(-0.2)
P 		285.1
(-3)
P 		218
avr 420.2
(3) 		373.7
(0.8) 		333.4
(-1) 		291.5
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 390.2
(3)
P 		352.4
(1.6)
P 		316.8
(0.3)
P 		228.1
(-3)
P 		265.3
(-1.6)
P 		346.3
(1.4)
P 		162
B 406
(3)
P 		387.5
(2.3)
P 		345.7
(0.8)
P 		358.7
(1.2)
P 		243.9
(-3)
P 		274.8
(-1.9)
P 		162
C 258.8
(-1.1)
P 		212.5
(-3)
P 		252
(-1.4)
P 		271.8
(-0.6)
P 		239.9
(-1.9)
P 		360.2
(3)
P 		148
avr 351.7
(3) 		317.5
(1) 		304.8
(0.2) 		286.2
(-0.9) 		249.7
(-3) 		327.1
(1.6) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 138.9
(3)
P 		78.5
(-0.4)
P 		58.4
(-1.5)
P 		30.9
(-3)
P 		108
B 120
(3)
P 		102.3
(0.3)
P 		90.9
(-1.4)
P 		80.6
(-3)
P 		39
C 166.4
(3)
P 		99.3
(-0.4)
P 		134.1
(1.4)
P 		48.1
(-3)
P 		118
avr 141.8
(3) 		93.4
(-0.3) 		94.5
(-0.2) 		53.2
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 71.9
(-1.8)
P 		125.3
(3)
P 		69
(-2)
P 		57.9
(-3)
P 		80
(-1)
P 		84.3
(-0.6)
P 		67
B 141.3
(3)
P 		129
(1.7)
P 		83.9
(-3)
P 		95
(-1.8)
P 		99.1
(-1.4)
P 		102.5
(-1.1)
P 		57
C 95.9
(0.8)
P 		64.9
(-2.1)
P 		64.1
(-2.1)
P 		54.7
(-3)
P 		77.6
(-0.9)
P 		120.6
(3)
P 		66
avr 103
(2.5) 		106.4
(3) 		72.3
(-2.5) 		69.2
(-3) 		85.6
(-0.4) 		102.5
(2.4) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186030_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.763
Sequence Type Exemplar sequence
Representative Public ID C43E11.1 NCBI
Target Description C43E11.1 /REP_DB=WormBase Gene ID /WP=CE23592 /TR=P91156 /GB=AAB37630.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058943 NCBI Caenorhabditis elegans C43E11.1 (C43E11.1) mRNA, complete cds. 11/11 None
SNAP00000009713 ENSEMBL cdna:SNAP chromosome:CEL140:I:4272141:4273014:1 11/11 None
GENEFINDER00000009727 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4272180:4273014:1 11/11 None
C43E11.1.1 ENSEMBL cdna:known chromosome:CEL140:I:4270698:4273325:1 gene:C43E11.1 11/11 None
C43E11.1.2 ENSEMBL cdna:known chromosome:CEL140:I:4270706:4273559:1 gene:C43E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4270735-4273014(+) 90.48 100.0
Public Domain and Genome References
Gene Title
Ensembl C43E11.1
Entrez Gene 172030 Entrez gene
SwissProt P91156 EMBL-EBI
WormBase CE23592 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605726_AT similar to Apoptotic chromatin condensation inducer in the nucleus (Acinus) cfa
CANINE:1584876_AT similar to Apoptotic chromatin condensation inducer in the nucleus (Acinus) cfa
CANINE_2:CFA.18236.1.S1_S_AT similar to Apoptotic chromatin condensation inducer in the nucleus (Acinus) cfa
CANINE_2:CFA.20285.1.S1_S_AT similar to Apoptotic chromatin condensation inducer in the nucleus (Acinus) cfa
CANINE_2:CFA.8211.1.A1_AT similar to Apoptotic chromatin condensation inducer in the nucleus (Acinus) cfa
CANINE_2:CFAAFFX.17781.1.S1_AT similar to Apoptotic chromatin condensation inducer in the nucleus (Acinus) cfa
DROSOPHILA_2:1624284_A_AT dm
DROSOPHILA_2:1623584_AT dm
DROSGENOME1:154197_AT dm
HG-U133_PLUS_2:201715_S_AT apoptotic chromatin condensation inducer 1 hs
HG-U133A:201715_S_AT apoptotic chromatin condensation inducer 1 hs
HG-U133A_2:201715_S_AT apoptotic chromatin condensation inducer 1 hs
HU35KSUBC:RC_D80917_F_AT apoptotic chromatin condensation inducer 1 hs
HU35KSUBC:RC_AA406384_AT apoptotic chromatin condensation inducer 1 hs
HU35KSUBD:RC_AA412144_AT apoptotic chromatin condensation inducer 1 hs
U133_X3P:G7662237_3P_A_AT apoptotic chromatin condensation inducer 1 hs
HG-U95AV2:33398_AT apoptotic chromatin condensation inducer 1 hs
HG-U133_PLUS_2:243249_AT Apoptotic chromatin condensation inducer 1 hs
HG-U133B:243249_AT Apoptotic chromatin condensation inducer 1 hs
HG-U95B:42344_AT Apoptotic chromatin condensation inducer 1 hs
HG-U95C:51571_AT Apoptotic chromatin condensation inducer 1 hs
HG-U95D:84384_AT Apoptotic chromatin condensation inducer 1 hs
HG-U95D:91679_AT Apoptotic chromatin condensation inducer 1 hs
HU35KSUBD:RC_W88562_AT Apoptotic chromatin condensation inducer 1 hs
MOUSE430_2:1421197_A_AT apoptotic chromatin condensation inducer 1 mm
MOE430A:1421197_A_AT apoptotic chromatin condensation inducer 1 mm
MOUSE430A_2:1421197_A_AT apoptotic chromatin condensation inducer 1 mm
MU11KSUBA:AA444568_S_AT apoptotic chromatin condensation inducer 1 mm
MG-U74AV2:97441_AT apoptotic chromatin condensation inducer 1 mm
MG-U74BV2:163774_AT apoptotic chromatin condensation inducer 1 mm
MG-U74CV2:170630_AT apoptotic chromatin condensation inducer 1 mm
MOE430A:1416568_A_AT apoptotic chromatin condensation inducer 1 mm
MOUSE430A_2:1416568_A_AT apoptotic chromatin condensation inducer 1 mm
MOUSE430_2:1416568_A_AT apoptotic chromatin condensation inducer 1 mm
MU19KSUBA:TC19070_AT Apoptotic chromatin condensation inducer 1 (Acin1), transcript variant 2, mRNA mm
MU19KSUBA:TC19070_G_AT Apoptotic chromatin condensation inducer 1 (Acin1), transcript variant 2, mRNA mm
RG-U34C:RC_AI073030_AT apoptotic chromatin condensation inducer 1 (predicted) rn
RAE230A:1398944_AT apoptotic chromatin condensation inducer 1 (predicted) rn
RAT230_2:1398944_AT apoptotic chromatin condensation inducer 1 (predicted) rn
RAE230B:1396098_AT apoptotic chromatin condensation inducer 1 (predicted) rn
RAT230_2:1396098_AT apoptotic chromatin condensation inducer 1 (predicted) rn
RAE230B:1394774_AT apoptotic chromatin condensation inducer 1 (predicted) rn
RAT230_2:1394774_AT apoptotic chromatin condensation inducer 1 (predicted) rn
RAE230B:1381060_AT Apoptotic chromatin condensation inducer 1 (predicted) rn
RAT230_2:1381060_AT Apoptotic chromatin condensation inducer 1 (predicted) rn
RG-U34C:RC_AI113313_AT Apoptotic chromatin condensation inducer 1 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37630 Hypothetical protein C43E11.1 [Caenorhabditis elegans] ref|NP_491344.1| C43E11.1 [Caenorhabditis elegans] 0.0
blast AAB37630 Hypothetical protein C43E11.1 [Caenorhabditis elegans] ref|NP_491344.1| C43E11.1 [Caenorhabditis elegans] 6.0E-94
blast CAE66748 Hypothetical protein CBG12098 [Caenorhabditis briggsae] 3.0E-91
blast AAB37630 Hypothetical protein C43E11.1 [Caenorhabditis elegans] ref|NP_491344.1| C43E11.1 [Caenorhabditis elegans] 8.0E-87
blast CAE66748 Hypothetical protein CBG12098 [Caenorhabditis briggsae] 6.0E-51
blast CAE66748 Hypothetical protein CBG12098 [Caenorhabditis briggsae] 4.0E-47
Protein Domains
Database ID Description E-Value
scop a.140.2.SAP domain All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain 2.09999990463257
Pfam IPR003034 EMBL-EBI DNA-binding SAP 8.0E-14
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.0E-5
Sequence
Target Sequence 
>C. ELEGANS:186030_S_AT
tagaggctactattgccgagccggctaaaatcggcggcggccgagctgatcggctctcga
ccacgtctcaaagttcgattcttggaggaaaaaccaacttccagattactatgcaaaatg
tacttcgcgacaacgataagcttgattcggagcgcaaaagggagcgtggaagtattcaat
cgagactcacacgcattgaaaacaaggatcaagtgaaggatgagaagaaagatgaaaaga
aagaggatagaaagagaaaacgatcggagactcccccattttctcgtggtgctgggttta
tggacgagaaaaaggctagaaatgaggagagggagcgaagacgagaaggcccgcgaagcg
aggaacgtcgaaaagttgttgtcgaagaagaagaggctccgaaaaagtcactcgatcagc
tcttcaagaaaactgtagctcttccgccgatttattatctgccattaacggaagagcaga
ttgctgccaaggaggctgagaagagtgcaaaaggaaaggagagagctgaaacaacatcag
atcgtgatcgtccacatcgagttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAGGCTACTATTGCCGAGCCGGC 237 653 1151 Antisense
GAGCCGGCTAAAATCGGCGGCGGCC 2 387 1168 Antisense
GACCACGTCTCAAAGTTCGATTCTT 253 383 1209 Antisense
GTATTCAATCGAGACTCACACGCAT 397 453 1322 Antisense
AGAAAACGATCGGAGACTCCCCCAT 309 73 1405 Antisense
TTTTCTCGTGGTGCTGGGTTTATGG 297 673 1429 Antisense
GAAGGCCCGCGAAGCGAGGAACGTC 393 333 1495 Antisense
CAAGAAAACTGTAGCTCTTCCGCCG 648 183 1575 Antisense
TCTTCCGCCGATTTATTATCTGCCA 709 617 1590 Antisense
AGCAGATTGCTGCCAAGGAGGCTGA 293 77 1625 Antisense
TCGTGATCGTCCACATCGAGTTGAC 669 603 1692 Antisense
Sequence Source Affymetrix Proprietary Database