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[186028_at]

Description C03A7.13 /REP_DB=WormBase Gene ID /WP=CE07871 /TR=O16510 /GB=AAB65994.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 3.9
(-3)
A 		5.8
(-2.9)
A 		13
(-2.4)
A 		93.7
(3)
A 		90
B 11.3
(-2.7)
A 		5.9
(-3)
A 		5.7
(-3)
A 		125.5
(3)
A 		120
C 4.8
(-2.9)
A 		18.5
(-2.3)
A 		3.6
(-3)
A 		135.4
(3)
A 		132
avr 6.7
(-3) 		10.1
(-2.8) 		7.4
(-3) 		118.2
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 7
(-2.7)
A 		4.8
(-2.9)
A 		4.1
(-3)
A 		3.8
(-3)
A 		16.9
(-2)
A 		80.2
(3)
A 		76
B 4.9
(-3)
A 		4.5
(-3)
A 		6.7
(-2.9)
A 		15.6
(-2.5)
A 		42.8
(-1.1)
A 		125.8
(3)
A 		121
C 5.2
(-2.9)
A 		3.8
(-3)
A 		5.3
(-2.9)
A 		5.4
(-2.9)
A 		4.5
(-3)
A 		143.8
(3)
A 		140
avr 5.7
(-2.9) 		4.4
(-3) 		5.4
(-2.9) 		8.3
(-2.8) 		21.4
(-2.1) 		116.6
(3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 1.4
(-3)
A 		1.3
(-3)
A 		3.4
(-2)
A 		13.7
(3)
A 		12
B 3.6
(-2.5)
A 		1.5
(-3)
A 		1.3
(-3)
A 		26.7
(3)
A 		25
C 1.6
(-2.9)
A 		5.3
(-1.9)
A 		1.3
(-3)
A 		22.8
(3)
A 		22
avr 2.2
(-2.9) 		2.7
(-2.8) 		2
(-3) 		21.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		1.7
(-2.7)
A 		0.9
(-3)
A 		1
(-3)
A 		5.1
(-1.6)
A 		19.5
(3)
A 		19
B 1.7
(-3)
A 		1.5
(-3)
A 		1.6
(-3)
A 		4.1
(-2.7)
A 		17.4
(-0.9)
A 		46.9
(3)
A 		45
C 1.9
(-2.9)
A 		1.2
(-3)
A 		1.3
(-3)
A 		1.1
(-3)
A 		1.5
(-2.9)
A 		48.1
(3)
A 		47
avr 1.6
(-3) 		1.5
(-3) 		1.3
(-3) 		2.1
(-2.9) 		8
(-1.9) 		38.2
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14960
Sequence Type Exemplar sequence
Representative Public ID C03A7.13 NCBI
Target Description C03A7.13 /REP_DB=WormBase Gene ID /WP=CE07871 /TR=O16510 /GB=AAB65994.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071991 NCBI Caenorhabditis elegans C03A7.13 (C03A7.13) mRNA, complete cds. 11/11 None
SNAP00000035292 ENSEMBL cdna:SNAP chromosome:CEL140:V:5190942:5192443:-1 11/11 None
GENEFINDER00000035295 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5190942:5192343:-1 11/11 None
C03A7.13 ENSEMBL cdna:known chromosome:CEL140:V:5190942:5192343:-1 gene:C03A7.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5190941-5192343(-) 88.57 100.0
Public Domain and Genome References
Gene Title
Ensembl C03A7.13
Entrez Gene 182143 Entrez gene
SwissProt O16510 EMBL-EBI
WormBase CE07871 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65994 Hypothetical protein C03A7.13 [Caenorhabditis elegans] ref|NP_504392.1| C03A7.13 [Caenorhabditis elegans] 1.0E-160
blast AAB65994 Hypothetical protein C03A7.13 [Caenorhabditis elegans] ref|NP_504392.1| C03A7.13 [Caenorhabditis elegans] 1.0E-146
blast AAB66005 Udp-glucuronosyltransferase protein 51 [Caenorhabditis elegans] ref|NP_504388.2| C03A7.11 [Caenorhabditis elegans] 8.0E-90
blast CAE64089 Hypothetical protein CBG08694 [Caenorhabditis briggsae] 5.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504392.1 1 7-29
C03A7.13 1 7-29
GENEFINDER00000035295 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186028_AT
gaatcagcacttgccgatcagaaccttcacgctttcctcacttctaggcagtatgatatt
ggagttgtttcagtttttgattattgtggaattgggatgcttgtgaagtcagaagttcca
tcaattgcaacatttaatgctctcccactcttatcaattcaaacagtgacaatgggtctt
ccgaatattgcttctcaggatgttccgttgttctactcattcgacctgtcaacactttac
ggtaaattctggaatctagcatgctggagatttcttaatttgatcagaatcccatcgctc
aaacacgagcaagaaaaaatattccaaaaagtgtatggagatgatttcaatatggacgat
atcatcgacaaagttgatatcacatttgttaattccaatgaagtacttgagagaccacgt
ccgctacatcacagaattcagtacattggaggaattaatttgaaagatccaaaatcagtc
aatatcaaagttgatgttgacagctcagataagtgcgttggcgaaacacctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAGCACTTGCCGATCAGAACC 465 327 364 Antisense
GCTTTCCTCACTTCTAGGCAGTATG 670 303 394 Antisense
TGCAACATTTAATGCTCTCCCACTC 206 577 489 Antisense
TCTCCCACTCTTATCAATTCAAACA 467 611 504 Antisense
AGTGACAATGGGTCTTCCGAATATT 561 59 528 Antisense
GCTTCTCAGGATGTTCCGTTGTTCT 596 303 553 Antisense
TTCTACTCATTCGACCTGTCAACAC 102 689 574 Antisense
AATTTGATCAGAATCCCATCGCTCA 199 175 640 Antisense
AAGTACTTGAGAGACCACGTCCGCT 468 155 764 Antisense
ACGTCCGCTACATCACAGAATTCAG 493 95 780 Antisense
TAAGTGCGTTGGCGAAACACCTCTG 181 637 873 Antisense
Sequence Source Affymetrix Proprietary Database