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[186027_at]

Description C29H12.5 /REP_DB=WormBase Gene ID /WP=CE02518 /TR=Q18313 /GB=AAC46697.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 42.5
(-1.6)
A 		54
(-0.7)
A 		23.8
(-3)
A 		102.4
(3)
A 		79
B 19.3
(-2.3)
A 		43.4
(0.3)
A 		12.3
(-3)
A 		68.7
(3)
A 		56
C 48.3
(-2.1)
A 		61.3
(-1.4)
A 		32.2
(-3)
A 		142.3
(3)
A 		110
avr 36.7
(-2) 		52.9
(-0.8) 		22.8
(-3) 		104.5
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 67.8
(-1.3)
A 		12.8
(-3)
A 		88.9
(-0.7)
P 		112
(-0)
M 		211.4
(3)
P 		191.7
(2.4)
P 		199
B 36.7
(-3)
A 		56.8
(-2.3)
A 		116.8
(-0.3)
A 		132.3
(0.2)
P 		215.6
(3)
P 		204.7
(2.6)
P 		179
C 37.4
(-2.8)
A 		29.6
(-3)
A 		50
(-2.5)
A 		89.9
(-1.6)
A 		114.1
(-1)
P 		281.3
(3)
P 		252
avr 47.3
(-2.6) 		33.1
(-3) 		85.2
(-1.4) 		111.4
(-0.6) 		180.4
(1.6) 		225.9
(3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 15.5
(3)
A 		11.7
(0.5)
A 		6.2
(-3)
A 		15
(2.7)
A 		9
B 6.2
(-1.3)
A 		10.7
(1)
A 		2.9
(-3)
A 		14.6
(3)
A 		12
C 16
(-0.8)
A 		17.6
(0)
A 		11.2
(-3)
A 		24
(3)
A 		13
avr 12.6
(0.1) 		13.3
(0.5) 		6.8
(-3) 		17.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 12.5
(-2.2)
A 		4.5
(-3)
A 		19.4
(-1.5)
P 		28.4
(-0.6)
M 		63.8
(3)
P 		46.7
(1.3)
P 		59
B 12.8
(-3)
A 		18.9
(-2.5)
A 		28.4
(-1.7)
A 		35
(-1.2)
P 		87.6
(3)
P 		76.3
(2.1)
P 		75
C 13.9
(-2.7)
A 		9
(-3)
A 		12.7
(-2.7)
A 		18.1
(-2.4)
A 		36.9
(-1)
P 		94.2
(3)
P 		85
avr 13.1
(-2.8) 		10.8
(-3) 		20.2
(-2.1) 		27.2
(-1.4) 		62.8
(2.1) 		72.4
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4465
Sequence Type Exemplar sequence
Representative Public ID C29H12.5 NCBI
Target Description C29H12.5 /REP_DB=WormBase Gene ID /WP=CE02518 /TR=Q18313 /GB=AAC46697.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062823 NCBI Caenorhabditis elegans C29H12.5 (C29H12.5) mRNA, complete cds. 11/11 None
SNAP00000038439 ENSEMBL cdna:SNAP chromosome:CEL140:II:6110547:6113134:-1 11/11 None
GENEFINDER00000038449 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6110547:6113134:-1 11/11 None
C29H12.5 ENSEMBL cdna:known chromosome:CEL140:II:6110547:6113339:-1 gene:C29H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6110543-6113336(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29H12.5
Entrez Gene 183036 Entrez gene
SwissProt Q18313 EMBL-EBI
WormBase CE02518 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46697 Hypothetical protein C29H12.5 [Caenorhabditis elegans] ref|NP_495224.1| C29H12.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000953 EMBL-EBI Chromo 5.6E-9
Pfam IPR000953 EMBL-EBI Chromo 1.8E-7
Pfam IPR000953 EMBL-EBI Chromo 5.6E-9
Sequence
Target Sequence 
>C. ELEGANS:186027_AT
tgatgttcaccaaagacacttcctcctgtgatagtgtcgttttgttgaatagtctcgaga
acttcgagcgtgttgtggatattgatctgacgataatgaagaacactttattaattgccc
ccatcatcctgccgtcaccggaaaatgaaaattgccagaagttcttgataatctacgagc
aagagcttggcggatgccctatagtcattgagacaccggaagtgaatgcagccaagtttg
ctaaacaactcaaggagtattctgtcagtcatgaataccgaaaccgtcgcctcggtttgt
tcccgaaacttccaggaggagatcaacaagaaaatggtggattgccagagttttctcatc
atgtgtggcaaatgcagcttgagtcgaatgatgacacagttatcaagaatcgtttcgata
ttgcgagtgaaattgaaatgcctttgagtggtgaaatgctggagtgggatgatgttgcag
gcatagccaattatggggagattctgcgtaacaactcggataatactaccagcaggcgaa
aacgcgagacgtgctcttctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGTTCACCAAAGACACTTCCTC 373 567 1529 Antisense
CTTCCTCCTGTGATAGTGTCGTTTT 572 219 1547 Antisense
TCGAGAACTTCGAGCGTGTTGTGGA 543 597 1583 Antisense
AGAACACTTTATTAATTGCCCCCAT 379 71 1628 Antisense
GAGCTTGGCGGATGCCCTATAGTCA 673 387 1711 Antisense
TCATGAATACCGAAACCGTCGCCTC 402 621 1797 Antisense
TTGTTCCCGAAACTTCCAGGAGGAG 44 671 1825 Antisense
GGTGGATTGCCAGAGTTTTCTCATC 368 499 1864 Antisense
GGGAGATTCTGCGTAACAACTCGGA 447 495 2024 Antisense
AACTCGGATAATACTACCAGCAGGC 355 139 2041 Antisense
AAAACGCGAGACGTGCTCTTCTGAC 421 131 2067 Antisense
Sequence Source Affymetrix Proprietary Database