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[186025_at]

Description R03H10.4 /REP_DB=WormBase Gene ID /WP=CE02840 /TR=Q9GYM2 /GB=AAF99999.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 2.5
(-3)
A 		4.3
(-1.9)
A 		3.6
(-2.3)
A 		12.3
(3)
A 		10
B 7.1
(0.3)
A 		4.8
(-3)
A 		5.3
(-2.3)
A 		9
(3)
A 		4
C 42.3
(3)
A 		7
(-2.5)
A 		3.6
(-3)
A 		10.1
(-2)
A 		39
avr 17.3
(3) 		5.4
(-2.5) 		4.2
(-3) 		10.5
(-0.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 6.9
(-2.4)
A 		31.6
(0.5)
A 		16
(-1.4)
A 		2
(-3)
A 		53.3
(3)
A 		2.8
(-2.9)
A 		51
B 32.8
(3)
A 		5.5
(-2.4)
A 		3.7
(-2.7)
A 		25.7
(1.6)
A 		9.6
(-1.6)
A 		2.3
(-3)
A 		31
C 5.5
(-1.5)
A 		8.5
(-0.2)
A 		6
(-1.3)
A 		16
(3)
A 		4.2
(-2.1)
A 		2.1
(-3)
A 		14
avr 15.1
(0.8) 		15.2
(0.8) 		8.6
(-1.1) 		14.6
(0.7) 		22.4
(3) 		2.4
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.9
(-3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.8
(3)
A 		1
B 2.3
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1.9
(0.8)
A 		1
C 14
(3)
A 		2
(-2.7)
A 		1.3
(-3)
A 		1.7
(-2.8)
A 		13
avr 5.7
(3) 		1.4
(-2.6) 		1.1
(-3) 		1.8
(-2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.3
(-2.7)
A 		11.2
(1.1)
A 		3.5
(-1.8)
A 		0.5
(-3)
A 		16.1
(3)
A 		0.7
(-2.9)
A 		16
B 11.4
(3)
A 		1.8
(-2.5)
A 		0.9
(-3)
A 		6.8
(0.4)
A 		3.9
(-1.3)
A 		0.9
(-3)
A 		11
C 2
(0.1)
A 		2.6
(1.6)
A 		1.5
(-1.1)
A 		3.2
(3)
A 		1.4
(-1.3)
A 		0.7
(-3)
A 		3
avr 4.9
(0.9) 		5.2
(1.2) 		2
(-1.9) 		3.5
(-0.4) 		7.1
(3) 		0.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4833
Sequence Type Exemplar sequence
Representative Public ID R03H10.4 NCBI
Target Description R03H10.4 /REP_DB=WormBase Gene ID /WP=CE02840 /TR=Q9GYM2 /GB=AAF99999.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062329 NCBI Caenorhabditis elegans R03H10.4 (R03H10.4) mRNA, complete cds. 11/11 None
SNAP00000041940 ENSEMBL cdna:SNAP chromosome:CEL140:II:4167503:4168494:-1 11/11 None
GENEFINDER00000041954 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4167549:4168494:-1 11/11 None
R03H10.4 ENSEMBL cdna:known chromosome:CEL140:II:4167549:4168494:-1 gene:R03H10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4167547-4168493(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H10.4
Entrez Gene 187556 Entrez gene
SwissProt Q9GYM2 EMBL-EBI
WormBase CE02840 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99999 Hypothetical protein R03H10.4 [Caenorhabditis elegans] ref|NP_494730.1| R03H10.4 [Caenorhabditis elegans] 7.0E-86
blast AAF99999 Hypothetical protein R03H10.4 [Caenorhabditis elegans] ref|NP_494730.1| R03H10.4 [Caenorhabditis elegans] 1.0E-84
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 6.0E-48
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 1.0E-46
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 1.0E-20
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 9.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 4.6E-9
Sequence
Target Sequence 
>C. ELEGANS:186025_AT
agtattgtgtttttcgtcgtgctttttggctcaatttattgtgaaggttgccatgtccaa
atccgctgtccatgccctgatatgttggaaactttggttcaattccccgtggcaactttg
tactcggaaggagcgggctgtactcggaatgtgacttgtacggcggataaatatcaatcg
ctcagtttcatgtggtcagaaaccgagattcccagacctgataaagcggatgaatatccc
ttggcccttaccccgcaaccaagaaccggtgaatatgtcgacatgttctcatactttggt
gtagtctgtgaggatgatggatggtatgccactcaatacccaaatggagttacctatgag
tacgagtcggagtaccatactattgaatcatccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATTGTGTTTTTCGTCGTGCTTT 234 63 19 Antisense
TTTCGTCGTGCTTTTTGGCTCAATT 14 671 30 Antisense
TGTGAAGGTTGCCATGTCCAAATCC 252 557 58 Antisense
TCAATTCCCCGTGGCAACTTTGTAC 245 633 117 Antisense
GGAATGTGACTTGTACGGCGGATAA 174 531 164 Antisense
CAATCGCTCAGTTTCATGTGGTCAG 419 181 193 Antisense
CAGAAACCGAGATTCCCAGACCTGA 439 203 215 Antisense
AAGCGGATGAATATCCCTTGGCCCT 606 147 242 Antisense
GTCGACATGTTCTCATACTTTGGTG 622 473 295 Antisense
GGATGGTATGCCACTCAATACCCAA 476 513 337 Antisense
GAGTACCATACTATTGAATCATCCG 332 399 388 Antisense
Sequence Source Affymetrix Proprietary Database