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[186024_s_at]

Description K11D12.7 /REP_DB=WormBase Gene ID /WP=CE12138 /TR=O44622 /GB=AAB94227.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 45      6grp_total > 72      4grp_total > 41      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 1083.7
(-3)
P 		1822
(3)
P 		1436.9
(-0.1)
P 		1327.1
(-1)
P 		738
B 978.8
(-3)
P 		1477.6
(3)
P 		1463.7
(2.8)
P 		1387.4
(1.9)
P 		499
C 1063.7
(-3)
P 		1598.4
(3)
P 		1541.6
(2.4)
P 		1340.1
(0.1)
P 		535
avr 1042.1
(-3) 		1632.7
(3) 		1480.7
(1.5) 		1351.5
(0.1) 		591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2067
1 2 3 4 5 6 range
A 1286.6
(-3)
P 		1561.4
(-2.1)
P 		2752.1
(1.7)
P 		3164.4
(3)
P 		1981.6
(-0.8)
P 		1713.4
(-1.6)
P 		1878
B 1097.5
(-3)
P 		1566.9
(-1.4)
P 		2829.6
(3)
P 		2591.5
(2.2)
P 		2340.5
(1.3)
P 		1621.6
(-1.2)
P 		1732
C 1124.1
(-3)
P 		1733
(-1.2)
P 		2627.3
(1.5)
P 		3127.4
(3)
P 		2387.9
(0.8)
P 		1745.6
(-1.1)
P 		2003
avr 1169.4
(-3) 		1620.4
(-1.5) 		2736.3
(2.2) 		2961.1
(3) 		2236.7
(0.6) 		1693.5
(-1.2) 		1792
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 394.6
(3)
P 		395.5
(3)
P 		375.6
(2.4)
P 		194.3
(-3)
P 		201
B 312.1
(-1.6)
P 		364.9
(3)
P 		339.2
(0.8)
P 		295.7
(-3)
P 		69
C 352.1
(-0.6)
P 		459.5
(1.5)
P 		537.3
(3)
P 		226
(-3)
P 		311
avr 352.9
(0.8) 		406.6
(2.6) 		417.4
(3) 		238.7
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 714
1 2 3 4 5 6 range
A 237.2
(-3)
P 		555.3
(0.4)
P 		599.4
(0.8)
P 		802.6
(3)
P 		598
(0.8)
P 		417.2
(-1.1)
P 		565
B 381.9
(-3)
P 		521.6
(-1.5)
P 		687.1
(0.2)
P 		686.4
(0.2)
P 		950.9
(3)
P 		604.7
(-0.7)
P 		569
C 416.7
(-3)
P 		528.8
(-1.1)
P 		668.7
(1.2)
P 		628.9
(0.6)
P 		772.7
(3)
P 		584.4
(-0.2)
P 		356
avr 345.3
(-3) 		535.2
(-0.3) 		651.7
(1.3) 		706
(2) 		773.9
(3) 		535.4
(-0.3) 		429
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186024_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15390
Sequence Type Exemplar sequence
Representative Public ID K11D12.7 NCBI
Target Description K11D12.7 /REP_DB=WormBase Gene ID /WP=CE12138 /TR=O44622 /GB=AAB94227.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071950(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071950 NCBI Caenorhabditis elegans K11D12.7 (K11D12.7) mRNA, complete cds. 10/11 None
SNAP00000023425 ENSEMBL cdna:SNAP chromosome:CEL140:V:5035207:5036277:-1 10/11 None
GENEFINDER00000023443 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5034077:5036277:-1 9/11 None
K11D12.7.1 ENSEMBL cdna:known chromosome:CEL140:V:5035065:5036277:-1 gene:K11D12.7 10/11 None
K11D12.7.2 ENSEMBL cdna:known chromosome:CEL140:V:5035103:5036279:-1 gene:K11D12.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071951 1/11 Cross Hyb Matching Probes None
SNAP00000023426 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023442 1/11 Cross Hyb Matching Probes None
K11D12.11 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5035206-5037826(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11D12.7
Entrez Gene 178891 Entrez gene
SwissProt O44622 EMBL-EBI
WormBase CE28945 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504351 K11D12.7 [Caenorhabditis elegans] gb|AAK95883.1| Hypothetical protein K11D12.7 [Caenorhabditis elegans] 1.0E-115
blast T32657 hypothetical protein K11D12.7 - Caenorhabditis elegans 1.0E-115
blast NP_504351 K11D12.7 [Caenorhabditis elegans] gb|AAK95883.1| Hypothetical protein K11D12.7 [Caenorhabditis elegans] 1.0E-105
blast T32657 hypothetical protein K11D12.7 - Caenorhabditis elegans 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.2E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:186024_S_AT
gaaactactttgcctactgttgtgcagcagcaatgctgaaagttcttttagcaatcggtc
tactgtgtttgatagatgtttcagctcagttccgtgctgaatgtgagcatccgcttcatt
ttggagttcagcaatgcaccaacacttcagttgtcagatatcacttcgacatggaaagca
agaaatgccttgctttcaaatacactggatgtggaggaaacgagaacaatttcaaggatt
actcagcttgctcaaacttctgtattccaatggactatttcacatgcccaggtggcagtg
atagtgtcgctggaaagaacggaaagagccactgtggaggaatggaacaattgaagtgcg
atggcccgaatactttctgcttgaatggcccattcactggaatctgttgcgacacgagaa
tcagagacaaaatcgatgccgactacgccaaggagtgtggaccaggaaagctgaagcatc
aaattgatattggaggtgtcaagatcccaatgttcggaaaaacttgcgattctacattct
gcccagcctatacaaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTACTTTGCCTACTGTTGTGC 408 357 425 Antisense
TAGATGTTTCAGCTCAGTTCCGTGC 585 651 497 Antisense
GAGCATCCGCTTCATTTTGGAGTTC 400 387 529 Antisense
TCAGCAATGCACCAACACTTCAGTT 38 625 552 Antisense
GGATTACTCAGCTTGCTCAAACTTC 338 509 660 Antisense
ATGGACTATTTCACATGCCCAGGTG 648 51 694 Antisense
GAAGTGCGATGGCCCGAATACTTTC 706 335 777 Antisense
TACTTTCTGCTTGAATGGCCCATTC 166 645 795 Antisense
GAGGTGTCAAGATCCCAATGTTCGG 276 401 917 Antisense
AAACTTGCGATTCTACATTCTGCCC 83 129 944 Antisense
CATTCTGCCCAGCCTATACAAAGTG 41 217 959 Antisense
Sequence Source Affymetrix Proprietary Database