[Home] | [Total List]

[186023_s_at]

Description C44B12.5 /REP_DB=WormBase Gene ID /WP=CE16921 /TR=O44144 /GB=AAB88328.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 48.1
(-1.1)
A 		3.5
(-3)
A 		38.2
(-1.5)
A 		141.1
(3)
P 		138
B 20.1
(-1.9)
A 		41.2
(-0.4)
A 		4.1
(-3)
A 		89.2
(3)
P 		85
C 10
(-2.9)
A 		8
(-3)
A 		25.4
(-2.2)
A 		134.4
(3)
P 		126
avr 26.1
(-2.5) 		17.6
(-3) 		22.6
(-2.7) 		121.6
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1617
1 2 3 4 5 6 range
A 7.8
(-3)
A 		27.3
(-2.9)
A 		26.4
(-2.9)
A 		6.8
(-3)
A 		1431.8
(3)
P 		992.8
(1.2)
P 		1425
B 9.7
(-3)
A 		5.7
(-3)
A 		3.6
(-3)
A 		45.9
(-2.8)
P 		1558.5
(3)
P 		961.3
(0.7)
P 		1555
C 32.2
(-2.9)
A 		53.3
(-2.8)
A 		4
(-3)
A 		38.9
(-2.9)
A 		1620.2
(3)
P 		845
(0.1)
P 		1616
avr 16.6
(-3) 		28.8
(-2.9) 		11.3
(-3) 		30.5
(-2.9) 		1536.8
(3) 		933
(0.6) 		1526
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.5
(2)
A 		0.8
(-3)
A 		10
(-0.2)
A 		20.7
(3)
P 		20
B 6.4
(-1.2)
A 		10.2
(0.1)
A 		1
(-3)
A 		19
(3)
P 		18
C 3.3
(-2.7)
A 		2.3
(-3)
A 		8.8
(-1.1)
A 		22.7
(3)
P 		20
avr 9.1
(-1.3) 		4.4
(-3) 		6.6
(-2.2) 		20.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 632
1 2 3 4 5 6 range
A 1.4
(-3)
A 		9.7
(-2.9)
A 		5.8
(-2.9)
A 		1.7
(-3)
A 		432.1
(3)
P 		241.7
(0.3)
P 		431
B 3.4
(-3)
A 		1.9
(-3)
A 		0.9
(-3)
A 		12.2
(-2.9)
P 		633.2
(3)
P 		358.5
(0.4)
P 		632
C 11.9
(-2.9)
A 		16.3
(-2.8)
A 		1
(-3)
A 		7.8
(-2.9)
A 		524.3
(3)
P 		282.9
(0.2)
P 		523
avr 5.6
(-3) 		9.3
(-2.9) 		2.6
(-3) 		7.2
(-2.9) 		529.9
(3) 		294.4
(0.3) 		527
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186023_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11223
Sequence Type Exemplar sequence
Representative Public ID C44B12.5 NCBI
Target Description C44B12.5 /REP_DB=WormBase Gene ID /WP=CE16921 /TR=O44144 /GB=AAB88328.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067640 NCBI Caenorhabditis elegans C44B12.5 (C44B12.5) mRNA, complete cds. 11/11 A 
SNAP00000002999 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1121582:1125127:-1 11/11 None
GENEFINDER00000003007 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1121582:1125085:-1 11/11 None
C44B12.5 ENSEMBL cdna:known chromosome:CEL140:IV:1121495:1125283:-1 gene:C44B12.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1121587-1125289(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B12.5
Entrez Gene 176932 Entrez gene
SwissProt O44144 EMBL-EBI
WormBase CE16921 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500041 C44B12.5 [Caenorhabditis elegans] gb|AAB88328.1| Hypothetical protein C44B12.5 [Caenorhabditis elegans] 1.0E-128
blast NP_500041 C44B12.5 [Caenorhabditis elegans] gb|AAB88328.1| Hypothetical protein C44B12.5 [Caenorhabditis elegans] 1.0E-105
blast NP_500041 C44B12.5 [Caenorhabditis elegans] gb|AAB88328.1| Hypothetical protein C44B12.5 [Caenorhabditis elegans] 5.0E-96
blast CAE68279 Hypothetical protein CBG13962 [Caenorhabditis briggsae] 5.0E-60
blast CAE68279 Hypothetical protein CBG13962 [Caenorhabditis briggsae] 6.0E-60
blast CAE68279 Hypothetical protein CBG13962 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500041.1 1 23-45
C44B12.5 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:186023_S_AT
tgtaacttctgctgccaacagaccgcccgtcgtgacacttcccttcccaacgatcaactc
ttcggattcttggctattaccaaggatgatgatgatgagacattcaagagatccaagaga
ggagctgatgatgatgatgataatgattcggattctgatgagaaggacggaaaacatgga
cgtggaagattccataaggttgactctacctacttgtcagaggccaactgggagccaaag
aaatatcataagaatgtcaagtgcgtgtgctgtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAACTTCTGCTGCCAACAGACCG 567 557 577 Antisense
CTTCCCAACGATCAACTCTTCGGAT 447 217 619 Antisense
CGATCAACTCTTCGGATTCTTGGCT 397 249 627 Antisense
CTCTTCGGATTCTTGGCTATTACCA 403 229 634 Antisense
GATGATGAGACATTCAAGAGATCCA 301 411 667 Antisense
GAAGGACGGAAAACATGGACGTGGA 128 333 738 Antisense
GAAGATTCCATAAGGTTGACTCTAC 450 337 761 Antisense
GGTTGACTCTACCTACTTGTCAGAG 291 505 774 Antisense
TCTACCTACTTGTCAGAGGCCAACT 527 613 781 Antisense
GTCAGAGGCCAACTGGGAGCCAAAG 82 465 792 Antisense
AATGTCAAGTGCGTGTGCTGTGCTC 96 165 829 Antisense
Sequence Source Affymetrix Proprietary Database