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[186020_s_at]

Description R107.6 /REP_DB=WormBase Gene ID /WP=CE00567 /TR=SW:P32744 /GB=CAA78472.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 40      6grp_total > 37      4grp_total > 43      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 914.8
(0.5)
P 		888.7
(-0.3)
P 		805.4
(-3)
P 		990.5
(3)
P 		185
B 678.8
(-3)
P 		817.9
(1.4)
P 		866.5
(3)
P 		731
(-1.3)
P 		188
C 855.9
(0.6)
P 		1010.4
(3)
P 		809.2
(-0.2)
P 		630.8
(-3)
P 		380
avr 816.5
(-1.4) 		905.7
(3) 		827
(-0.9) 		784.1
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 549
1 2 3 4 5 6 range
A 891.4
(3)
P 		787
(1.6)
P 		451.5
(-3)
P 		581
(-1.2)
P 		527.3
(-2)
P 		892.2
(3)
P 		441
B 731.1
(3)
P 		713.6
(2.6)
P 		562.7
(-0.9)
P 		505.2
(-2.3)
P 		473
(-3)
P 		697.5
(2.2)
P 		258
C 1000.6
(3)
P 		666.4
(-1)
P 		691.9
(-0.7)
P 		495.5
(-3)
P 		604.3
(-1.7)
P 		612.7
(-1.6)
P 		505
avr 874.4
(3) 		722.3
(0.4) 		568.7
(-2.3) 		527.2
(-3) 		534.9
(-2.9) 		734.1
(0.6) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 333.1
(3)
P 		192.9
(-1.5)
P 		210.6
(-0.9)
P 		145
(-3)
P 		188
B 216.5
(3)
P 		202
(1.6)
P 		200.8
(1.4)
P 		155.8
(-3)
P 		61
C 283.3
(2.8)
P 		290.5
(3)
P 		282
(2.7)
P 		106.4
(-3)
P 		184
avr 277.6
(3) 		228.5
(0.9) 		231.1
(1) 		135.7
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 164.3
(-0.8)
P 		279.9
(3)
P 		98.3
(-3)
P 		147.4
(-1.4)
P 		159.1
(-1)
P 		217.2
(0.9)
P 		182
B 254.4
(2.7)
P 		237.5
(1.9)
P 		136.6
(-2.9)
P 		133.8
(-3)
P 		192.2
(-0.2)
P 		260.1
(3)
P 		126
C 370.9
(3)
P 		203.3
(-0.7)
P 		176.1
(-1.3)
P 		99.7
(-3)
P 		195.5
(-0.9)
P 		205.1
(-0.7)
P 		271
avr 263.2
(3) 		240.2
(2) 		137
(-2.6) 		127
(-3) 		182.3
(-0.6) 		227.5
(1.4) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186020_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7677
Sequence Type Exemplar sequence
Representative Public ID R107.6 NCBI
Target Description R107.6 /REP_DB=WormBase Gene ID /WP=CE00567 /TR=SW:P32744 /GB=CAA78472.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066604 NCBI Caenorhabditis elegans CLASP family of microtubule-binding proteins family member (cls-2) (cls-2) mRNA, complete cds. 11/11 A 
SNAP00000003027 ENSEMBL cdna:SNAP chromosome:CEL140:III:9054957:9058531:1 11/11 None
GENEFINDER00000003033 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9054957:9058531:1 11/11 None
R107.6.3 ENSEMBL cdna:known chromosome:CEL140:III:9054955:9058531:1 gene:R107.6 11/11 None
R107.6.2 ENSEMBL cdna:known chromosome:CEL140:III:9054957:9058787:1 gene:R107.6 11/11 A 
R107.6.1 ENSEMBL cdna:known chromosome:CEL140:III:9054957:9058748:1 gene:R107.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9054823-9058527(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cls-2
Ensembl R107.6
Entrez Gene 176280 Entrez gene
SwissProt P32744 EMBL-EBI
WormBase CE37546 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588577_AT similar to CLIP-associating protein 2 cfa
CANINE_2:CFA.10409.1.A1_AT similar to CLIP-associating protein 2 cfa
CANINE_2:CFA.17279.1.S1_AT similar to CLIP-associating protein 2 cfa
CANINE_2:CFAAFFX.7775.1.S1_S_AT similar to CLIP-associating protein 2 cfa
CHICKEN:GGAAFFX.23727.1.S1_S_AT similar to KIAA0627 protein gga
CHICKEN:GGAAFFX.7611.2.S1_AT similar to KIAA0627 protein gga
CHICKEN:GGAAFFX.7611.2.S1_S_AT similar to KIAA0627 protein gga
HU35KSUBA:RC_AA262710_S_AT cytoplasmic linker associated protein 2 hs
HU35KSUBB:RC_AA122225_AT cytoplasmic linker associated protein 2 hs
HU35KSUBC:RC_D51159_S_AT cytoplasmic linker associated protein 2 hs
HU35KSUBD:RC_AA211300_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS2.108614.1.S1_3P_S_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S3_3P_X_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S3_3P_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S2_3P_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S1_3P_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:1555469_A_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:1558759_S_AT cytoplasmic linker associated protein 2 hs
HG-U133A_2:212306_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:212306_AT cytoplasmic linker associated protein 2 hs
HG-U133A:212306_AT cytoplasmic linker associated protein 2 hs
HG-U133A_2:212308_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:212308_AT cytoplasmic linker associated protein 2 hs
HG-U133A:212308_AT cytoplasmic linker associated protein 2 hs
HG-U133A_2:212309_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:212309_AT cytoplasmic linker associated protein 2 hs
HG-U133A:212309_AT cytoplasmic linker associated protein 2 hs
HG-U95AV2:38711_AT cytoplasmic linker associated protein 2 hs
HG-U95B:49920_AT cytoplasmic linker associated protein 2 hs
HG-U95C:64336_I_AT cytoplasmic linker associated protein 2 hs
HG-U95C:64337_F_AT cytoplasmic linker associated protein 2 hs
HG-U95D:86611_AT cytoplasmic linker associated protein 2 hs
HG-U95D:88655_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS2.108614.5.S1_3P_S_AT Cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:238224_AT Cytoplasmic linker associated protein 2 hs
HG-U133B:238224_AT Cytoplasmic linker associated protein 2 hs
HG-U95C:53998_AT Cytoplasmic linker associated protein 2 hs
HG-U95C:54177_I_AT Cytoplasmic linker associated protein 2 hs
HG-U95D:79298_AT Cytoplasmic linker associated protein 2 hs
HG-U95D:83342_AT Cytoplasmic linker associated protein 2 hs
HG-U95D:88964_R_AT Cytoplasmic linker associated protein 2 hs
U133_X3P:HS.176420.0.A1_3P_AT Cytoplasmic linker associated protein 2 hs
HU35KSUBD:RC_AA436671_AT Cytoplasmic linker associated protein 2 hs
MOE430A:1429976_AT CLIP associating protein 2 mm
MOUSE430_2:1429976_AT CLIP associating protein 2 mm
MOUSE430A_2:1429976_AT CLIP associating protein 2 mm
MOUSE430_2:1456911_AT CLIP associating protein 2 mm
MOE430B:1456911_AT CLIP associating protein 2 mm
MOUSE430_2:1424836_A_AT CLIP associating protein 2 mm
MOE430A:1424836_A_AT CLIP associating protein 2 mm
MOUSE430A_2:1424836_A_AT CLIP associating protein 2 mm
MOE430A:1427328_A_AT CLIP associating protein 2 mm
MOUSE430A_2:1427328_A_AT CLIP associating protein 2 mm
MOUSE430_2:1427328_A_AT CLIP associating protein 2 mm
MG-U74BV2:111038_AT CLIP associating protein 2 mm
MOE430B:1440802_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MOUSE430_2:1440802_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MOUSE430_2:1441726_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MOE430B:1441726_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MU19KSUBB:TC33429_F_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MU19KSUBB:TC33429_I_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
RG-U34C:RC_AI175481_AT CLIP associating protein 2 rn
RAE230A:1368099_AT CLIP associating protein 2 rn
RAT230_2:1368099_AT CLIP associating protein 2 rn
RAE230B:1396604_AT CLIP associating protein 2 rn
RAT230_2:1396604_AT CLIP associating protein 2 rn
RAE230B:1396698_AT CLIP associating protein 2 rn
RAT230_2:1396698_AT CLIP associating protein 2 rn
Protein Similarities
Method ID Description E-Value
blast CAA78472 Hypothetical protein R107.6 [Caenorhabditis elegans] ref|NP_499005.2| CLASP family of microtubule-binding proteins family member (cls-2) [Caenorhabditis elegans] sp|P32744|CLS2_CAEEL Kinetochore protein CLASP-2 0.0
blast S30876 hypothetical protein R107.6 - Caenorhabditis elegans 0.0
blast CAE65037 Hypothetical protein CBG09877 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010705 EMBL-EBI Mast, C-terminal 4.3E-87
Pfam IPR010705 EMBL-EBI Mast, C-terminal 4.3E-87
Sequence
Target Sequence 
>C. ELEGANS:186020_S_AT
aaaacttcgccaagctgttgatcgctgtcttcgatgtgctctccaaaagcgaatcagacg
ccaacaagaaagtagctctgcgcgttttgacaaagatgtgcacttcgcaagcatcgcgct
tgttcgactctacggaaatggccatctgtaaagttttggatgctgctgtcaactcacaag
acggaacgatgaacgtgaccgctgatgactgcttgaaaacgctggcaacccaccttccac
tggctaaggtggttaacatctcgcagctcattttgaatgaggagaaagctcaagaaccca
aagcaagcttggttctgaaaatgatgaccagattgtttgaaggtctccaagccgacgaat
tgagcccagtggttgatgatttggcgccatgtgtgatcaagtcttacgattccccatcgt
ctgcagttcggaaaactgctgtctactgtctggtcgcgatggtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTTCGCCAAGCTGTTGATCGC 94 131 2621 Antisense
GTTGATCGCTGTCTTCGATGTGCTC 264 439 2637 Antisense
GTAGCTCTGCGCGTTTTGACAAAGA 233 457 2692 Antisense
AGATGTGCACTTCGCAAGCATCGCG 6 69 2714 Antisense
TTGGATGCTGCTGTCAACTCACAAG 98 709 2776 Antisense
TGAACGTGACCGCTGATGACTGCTT 406 573 2810 Antisense
TAAGGTGGTTAACATCTCGCAGCTC 424 619 2865 Antisense
GTCTCCAAGCCGACGAATTGAGCCC 253 469 2963 Antisense
TCCCCATCGTCTGCAGTTCGGAAAA 86 597 3031 Antisense
GTTCGGAAAACTGCTGTCTACTGTC 640 439 3046 Antisense
TCTACTGTCTGGTCGCGATGGTGAA 503 613 3062 Antisense
Sequence Source Affymetrix Proprietary Database