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[186019_at]

Description T25G12.1 /REP_DB=WormBase Gene ID /WP=CE07538 /TR=Q22788 /GB=AAC69017.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 38.5
(3)
A 		29.2
(0.9)
A 		11.8
(-2.9)
A 		11.4
(-3)
A 		27
B 8.4
(-1.2)
A 		20.1
(3)
A 		10.1
(-0.6)
A 		3.5
(-3)
A 		17
C 11.7
(-2.6)
A 		9.1
(-3)
A 		16.1
(-2)
A 		52.7
(3)
A 		44
avr 19.5
(1.2) 		19.5
(1.2) 		12.7
(-3) 		22.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.5
(-3)
A 		16
(3)
A 		7.9
(-0.9)
A 		3.5
(-3)
A 		12.3
(1.2)
A 		6.8
(-1.4)
A 		13
B 14
(3)
A 		10.6
(0.5)
A 		11.8
(1.4)
A 		12.2
(1.7)
A 		11
(0.8)
A 		6
(-3)
A 		8
C 4.3
(-3)
A 		8.3
(-0.5)
A 		10.3
(0.8)
A 		13.3
(2.7)
A 		13.8
(3)
A 		13
(2.5)
A 		10
avr 7.3
(-3) 		11.6
(2.1) 		10
(0.2) 		9.7
(-0.2) 		12.4
(3) 		8.6
(-1.5) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14
(3)
A 		6.3
(-0.8)
A 		3.1
(-2.3)
A 		1.7
(-3)
A 		12
B 2.7
(-0.2)
A 		5
(3)
A 		2.3
(-0.8)
A 		0.7
(-3)
A 		4
C 3.9
(-1.8)
A 		2.6
(-3)
A 		5.6
(-0.1)
A 		8.9
(3)
A 		6
avr 6.9
(3) 		4.6
(-1.3) 		3.7
(-3) 		3.8
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-3)
A 		5.7
(3)
A 		1.7
(-1.7)
A 		0.9
(-2.6)
A 		3.7
(0.6)
A 		1.7
(-1.7)
A 		5
B 4.9
(3)
A 		3.5
(-0.1)
A 		2.9
(-1.4)
A 		3.2
(-0.8)
A 		4.5
(2.1)
A 		2.2
(-3)
A 		3
C 1.6
(-3)
A 		2.5
(-1.1)
A 		2.6
(-0.9)
A 		2.7
(-0.7)
A 		4.5
(3)
A 		4.4
(2.8)
A 		3
avr 2.4
(-2.7) 		3.9
(2.1) 		2.4
(-2.7) 		2.3
(-3) 		4.2
(3) 		2.8
(-1.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17874
Sequence Type Exemplar sequence
Representative Public ID T25G12.1 NCBI
Target Description T25G12.1 /REP_DB=WormBase Gene ID /WP=CE07538 /TR=Q22788 /GB=AAC69017.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078395 NCBI Caenorhabditis elegans T25G12.1 (T25G12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000027880 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17245883:17250348:1 11/11 None
SNAP00000027878 ENSEMBL cdna:SNAP chromosome:CEL140:X:17247904:17249965:1 11/11 None
T25G12.1 ENSEMBL cdna:known chromosome:CEL140:X:17248988:17249918:1 gene:T25G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17248987-17249918(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T25G12.1
Entrez Gene 188906 Entrez gene
SwissProt Q22788 EMBL-EBI
WormBase CE07538 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69017 Hypothetical protein T25G12.1 [Caenorhabditis elegans] ref|NP_510796.1| T25G12.1 [Caenorhabditis elegans] 1.0E-125
blast AAC69017 Hypothetical protein T25G12.1 [Caenorhabditis elegans] ref|NP_510796.1| T25G12.1 [Caenorhabditis elegans] 1.0E-119
blast AAC69018 Hypothetical protein T25G12.2 [Caenorhabditis elegans] ref|NP_510795.1| T25G12.2 [Caenorhabditis elegans] 2.0E-87
blast AAC69018 Hypothetical protein T25G12.2 [Caenorhabditis elegans] ref|NP_510795.1| T25G12.2 [Caenorhabditis elegans] 2.0E-49
blast CAB55005 Hypothetical protein Y105C5A.25 [Caenorhabditis elegans] ref|NP_502889.1| Y105C5A.25 [Caenorhabditis elegans] 3.0E-9
blast CAB55005 Hypothetical protein Y105C5A.25 [Caenorhabditis elegans] ref|NP_502889.1| Y105C5A.25 [Caenorhabditis elegans] 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186019_AT
aggcaatcccgaacagctttgacatcacctgctgcatcatcagaaaccatctccgctgaa
gatattcaaaaagcgatggaaatcgaagataatgaagggttcaaaactcctgtcagcact
ccgaaacgacgatactccacgacaaaaaaaatgactccgaagccacttccagagaaacaa
agaaactgtcgaattcgcattggatttcttgacctcttctctgtcgaaacagaagcaatt
gttgttccaagctatgcagatgcaaatattgttgtagacgaaatggtggaaaagtttcca
gagttcaaagctgttctcgcgtcgaaggacaacttttttgtgaaggaatgcacagataga
atcgttgaaaattttgatgcggtttcatgcaaatggaagaaagatccccgaacaacaatc
catgttgcaccaccatgtctcgagatgaaaagtgtgttttccgttgtgactgaagcccat
ctccgagggtcctacctcacctcattagtgcgatgtgacgagtctggagcgaaaagtatt
gcttttccgattggcgggtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCAATCCCGAACAGCTTTGACAT 575 53 76 Antisense
ACATCACCTGCTGCATCATCAGAAA 633 105 97 Antisense
AGGGTTCAAAACTCCTGTCAGCACT 158 55 171 Antisense
GCACTCCGAAACGACGATACTCCAC 378 315 191 Antisense
TCGCATTGGATTTCTTGACCTCTTC 4 601 270 Antisense
AGAGTTCAAAGCTGTTCTCGCGTCG 314 69 375 Antisense
AAGATCCCCGAACAACAATCCATGT 340 151 476 Antisense
TTGCACCACCATGTCTCGAGATGAA 218 701 500 Antisense
GTGTTTTCCGTTGTGACTGAAGCCC 441 483 529 Antisense
TCCTACCTCACCTCATTAGTGCGAT 54 585 565 Antisense
ATTGCTTTTCCGATTGGCGGGTGCC 286 3 613 Antisense
Sequence Source Affymetrix Proprietary Database