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[186018_at]

Description R03H10.7 /REP_DB=WormBase Gene ID /WP=CE02843 /TR=Q9GYL8 /GB=AAG00003.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 92      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 184.1
(2.1)
P 		133.5
(-0.9)
P 		98.3
(-3)
P 		198.5
(3)
P 		100
B 165.2
(-0.5)
P 		204.2
(1)
P 		94.9
(-3)
P 		260.6
(3)
P 		166
C 182.4
(0.1)
P 		148
(-2.1)
P 		134.6
(-3)
P 		228.2
(3)
P 		94
avr 177.2
(0.4) 		161.9
(-0.4) 		109.3
(-3) 		229.1
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 102.7
(-3)
P 		196.5
(1.7)
P 		157.1
(-0.2)
P 		187.3
(1.3)
P 		221.3
(3)
P 		180.4
(0.9)
P 		119
B 142.5
(-0.3)
P 		161.4
(0.7)
P 		91.6
(-3)
P 		172.7
(1.4)
P 		203.4
(3)
P 		138.4
(-0.5)
P 		112
C 160.9
(-0.4)
P 		204.2
(3)
P 		190.6
(1.9)
P 		133.3
(-2.6)
P 		137.4
(-2.2)
P 		127.7
(-3)
P 		77
avr 135.4
(-3) 		187.4
(3) 		146.4
(-1.7) 		164.4
(0.3) 		187.4
(3) 		148.8
(-1.5) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 67
(3)
P 		29
(-2.5)
P 		25.7
(-3)
P 		29.1
(-2.5)
P 		41
B 52.7
(2.5)
P 		50.4
(2.1)
P 		22
(-3)
P 		55.5
(3)
P 		34
C 60.4
(3)
P 		42.5
(-1.9)
P 		46.9
(-0.7)
P 		38.5
(-3)
P 		22
avr 60
(3) 		40.6
(-1.1) 		31.5
(-3) 		41
(-1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 18.9
(-3)
P 		69.9
(3)
P 		34.2
(-1.2)
P 		47.5
(0.4)
P 		66.8
(2.6)
P 		43.9
(-0.1)
P 		51
B 49.6
(-0.3)
P 		53.7
(0.1)
P 		22.2
(-3)
P 		45.7
(-0.7)
P 		82.6
(3)
P 		51.6
(-0.1)
P 		60
C 59.7
(2.6)
P 		62.3
(3)
P 		48.5
(0.7)
P 		26.8
(-3)
P 		44.5
(-0)
P 		42.8
(-0.3)
P 		36
avr 42.7
(-1.4) 		62
(2.5) 		35
(-3) 		40
(-2) 		64.6
(3) 		46.1
(-0.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5969
Sequence Type Exemplar sequence
Representative Public ID R03H10.7 NCBI
Target Description R03H10.7 /REP_DB=WormBase Gene ID /WP=CE02843 /TR=Q9GYL8 /GB=AAG00003.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062333 NCBI Caenorhabditis elegans R03H10.7 (R03H10.7) mRNA, complete cds. 11/11 None
GENEFINDER00000041952 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4177448:4178921:-1 9/11 None
R03H10.7 ENSEMBL cdna:known chromosome:CEL140:II:4175543:4178921:-1 gene:R03H10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041945 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4175541-4178920(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H10.7
Entrez Gene 187559 Entrez gene
SwissProt Q9GYL8 EMBL-EBI
WormBase CE02843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00003 Hypothetical protein R03H10.7 [Caenorhabditis elegans] ref|NP_494734.1| R03H10.7 [Caenorhabditis elegans] 1.0E-175
blast AAG00003 Hypothetical protein R03H10.7 [Caenorhabditis elegans] ref|NP_494734.1| R03H10.7 [Caenorhabditis elegans] 1.0E-141
blast AAG00002 Hypothetical protein R03H10.6 [Caenorhabditis elegans] ref|NP_494733.2| R03H10.6 [Caenorhabditis elegans] 4.0E-80
blast AAG00002 Hypothetical protein R03H10.6 [Caenorhabditis elegans] ref|NP_494733.2| R03H10.6 [Caenorhabditis elegans] 7.0E-58
blast CAA10466 F18A1.5 protein [Caenorhabditis briggsae] emb|CAA10310.1| F18A1.5 protein [Caenorhabditis briggsae] emb|CAE67510.1| Hypothetical protein CBG13026 [Caenorhabditis briggsae] 3.0E-41
blast CAA10466 F18A1.5 protein [Caenorhabditis briggsae] emb|CAA10310.1| F18A1.5 protein [Caenorhabditis briggsae] emb|CAE67510.1| Hypothetical protein CBG13026 [Caenorhabditis briggsae] 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:186018_AT
attaaacttgatcccactattctatcaaggttacccgtgactccaattgaaaacctcaag
gaaagtgtcaactatttcaagatccacggcagagttacactcatggatacacgtccacca
caccactaccagaaacgcttcaattttgagataaccgattttaatggcgacacaattgca
tgttctgcttcttctccagaggctgacgttttctatcaaaatcttgtcaaagaacagtca
tattaccttgccggaggacacattaaaaaaggccatgaaatttacaatcagacagggatc
gactatcaaattgatctcaacaatttcactattatggaacctgctccaaccttgcttaca
cttcccaaattcaatatccaacgggtattcctcagcgatgttgctaatgtgaagaaaccc
atcgatgttcttcttgagatcagacatcttcccgtaatgtttccaaacgttggtgtacca
cgcaacagtcgcaaaatgctatgcgatgcattccagagagagttctaccaaacccctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAAACTTGATCCCACTATTCTAT 219 13 316 Antisense
CTATCAAGGTTACCCGTGACTCCAA 539 223 337 Antisense
AAGATCCACGGCAGAGTTACACTCA 2 155 394 Antisense
ACACCACTACCAGAAACGCTTCAAT 585 109 435 Antisense
GCGACACAATTGCATGTTCTGCTTC 88 289 482 Antisense
CTTCTTCTCCAGAGGCTGACGTTTT 66 221 503 Antisense
AGAACAGTCATATTACCTTGCCGGA 225 73 546 Antisense
GCTTACACTTCCCAAATTCAATATC 318 305 669 Antisense
TATCCAACGGGTATTCCTCAGCGAT 391 647 690 Antisense
GAGATCAGACATCTTCCCGTAATGT 708 395 751 Antisense
AGAGAGAGTTCTACCAAACCCCTAT 400 65 830 Antisense
Sequence Source Affymetrix Proprietary Database